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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

Prof. Johan Grobbelaar part of history
2010-09-23

Prof. Johan Grobbelaar from the Department of Plant Sciences at the recent 31st Congress of the International Limnological Society (SIL), which was held in Cape Town.
Photo: Supplied

The 31st Congress of the International Limnological Society (SIL) was recently held at the Cape Town International Convention Centre (CTICC).

Prof. Johan Grobbelaar from the Department of Plant Sciences at the University of the Free State (UFS), who is also the chairperson of the local organising committee (LOC), worked hard for six years to secure the bid to host the congress in South Africa. The LOC consisted of Prof. Grobbelaar, Prof. Brian Allanson, Prof. Jenny Day, Dr Carin van Ginkel and Dr Mike Silberbauer.

SIL was founded in 1922 to further the study and understanding of all aspects of limnology, the science of inland aquatic ecosystems and their management.

Congresses are held every three years and this was the first time that SIL met on the African continent.

Almost 400 delegates from 42 countries attended this congress where the state of the science of limnology was presented with two keynote speakers, six plenary lectures, 230 oral and 76 poster presentations, mostly running in five parallel sessions. Exhibitions displayed some of South Africa’s role players as well as the latest equipment from abroad. Delegates could also join pre- and post-congress excursions and the new SIL journal, Inland Waters, was launched at the congress.

Many of the presentations dealt with water as a limited resource, pollution problems and the impact of climate change. The congress resolved that SIL would play a more prominent role in creating awareness of problems impacting on inland waters and also afforded solutions. The 32nd SIL congress will be held in Budapest, Hungary in 2013.
 

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