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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

Winter school for international visitors
2011-07-28

 
Here are, from the left, front: Vinita Verma (India), Gayatai Sharma (India), Ambar Istiyani (Indonesia); back: Frank Nieuwenhuizen (Netherland); Vicky Hölsgens (Netherland) and Dewi Cahya Ambarwati (Indonesia)
Photo: Hannes Pieterse

A group of activists, postgraduate students and staff from civil society organisations are currently visiting our Bloemfontein Campus to discuss issues of diversity and development. The group of 19 people from countries such as India, Indonesia, Uganda, the Netherlands and South Africa are part of the 2011 annual international winter school on Pluralism and Development, which is hosted by our International Institute for Studies in Race, Reconciliation and Social Justice. It is the first time that the winter school is held in South Africa since its launch in 2004.

The first class of the winter school started on 11 July 2011 and participants attend daily lectures where they engage in critical thinking about issues such as sustainable development, identity, reconciliation and pluralism. On Thursday 21 July 2011 our Vice-Chancellor and Rector, Prof Jonathan Jansen presented a lecture on reconciliation to participants where he spoke lengthily about South Africa’s traumatic past. Classes will come to an end on 5 August 2011.

During their stay at our university participants also visited Gauteng where they spent time at the Apartheid museum, Constitutional Hill and Freedom Park. Later this week they will visit our Qwaqwa Campus.

Indonesian participant, Ms. Dewi Cahya Ambarwati, said she is looking forward to the Qwaqwa visit, where she will show off her traditional dance. Ambarwati said during their visit to Freedom Park, she managed to trace back Indonesian ancestors in the museum’s slavery section. Another participant, Mr. Frank Nieuwenhuizen from the Netherlands, said the winter school is enriching because it makes you realise what it means to deal with differences.

The international Winter School on Pluralism and Development is an initiative of the Kosmopolis Institute of the University of Humanistic Studies, in cooperation with the Humanist Institute for Cooperation with Developing Countries (Hivos).

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