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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

Professor suggests San place-name book
2011-09-28

 

At the inaugural lecture of Prof. Raper were, from left to right: Dr Choice Makhetha, Vice-Rector: External Relations (actg); Prof. Theo du Plessis, head of our Department of Language Management and Language Practice; Prof. Raper; and Prof. Lucius Botes, Dean of our Faculty of Humanities.
Photo: Stephen Collett

Prof. Peter Raper, Honorary Professor: Linguistics, in the Department of Language Management and Language Practice at our university, delivered his inaugural lecture on Tuesday, 27 September 2011. Prof. Raper focused on the topic of “Interpretations and translations of Bushman (San) place names” and he recommended the establishment of a chair for Khoikhoi and Bushman name studies at the UFS. Prof. Raper said that, until about 2 000 years ago, the Bushmen and their ancestors were the only inhabitants of southern Africa and that, presumably, all place names in the region were of Bushman origin. Prof. Raper also suggested the publication of a dictionary of Bushman place names which will contribute to restoring and preserving Bushman toponymic, linguistic and cultural heritage.

In his inaugural lecture, Prof. Raper distinguished between the terms Bushman and San. He said “the term Bushman was for a long time considered an insult and San was preferred. Recently, Bushman became preferable and San is considered an insult”.

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