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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

University helps design new test of academic literacy for postgraduates
2012-09-04

The Inter-institutional Centre for Language Development and Assessment (ICELDA), of which the University of the Free State (UFS) is a founding partner, has secured a joint agreement with the Language Centre at the Radboud University Nijmegen in the Netherlands to design and develop another test of academic literacy for postgraduate students.

ICELDA is a partnership between four multilingual South African universities: Pretoria, Stellenbosch, North-West and Free State.

This design that ICELDA is coming up with will focus mainly on diagnostic purposes and follow in the footsteps of TALPS, the current test of academic literacy for postgraduate students at the four universities.

Prof. Albert Weideman, Head of the Department of English says TALPS has recently been the topic of a redesign and in-depth analysis undertaken by Colleen du Plessis, a junior lecturer in the Department of English for her master's dissertation. She is developing two further versions of it for ICELDA and the new project will involve Rebecca Patterson, who will do her long assignment for honours on the diagnostic value of the current test. A former doctoral student of the Department English Tobie van Dyk will be the project leader.

“The rationale for the project is that one can no longer take the academic literacy levels of postgraduate students for granted. We wish the investigating and development team that Tobie will put together, every success.”
 

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