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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

Kovsie students part of exclusive Stanford Sophomore College Programme
2012-09-14

Kovsie students Foster Lubbe (far right at the back) and Palesa Mafisa (middle front) interacting with students from Stanford University.
14 September 2012

The six students, Elri Marais, Palesa Mafisa, Goodwill Shelile, Foster Lubbe, Gabriella Schroder and Saheed Abdullah, are part of the Stanford Sophomore College Programme, a residential summer programme for second-year students. They have been at Stanford since the beginning of this month, engaging in intense academic exploration with peers and professors on a variety of innovative, multidisciplinary topics.

Writing about his experiences in San Francisco, Foster Lubbe said it has been a wonderful experience thus far. “The classes are very interactive. It is amazing to see how effectively students and lecturers make use of technological tools, especially the speedy Internet, during class,” he wrote.

Foster and Palesa have been doing a course on “Mixed Race in the New Millennium, Elri and Abdullah on, “The Meaning of Life, and Gabriella and Goodwill a course on “Ghost stories”. Highlights for the students have been a discussion with New York Times journalist, Susan Saulny, a visit to the Stanford Centre of Marine Biology and for Gabriella and Goodwill a San Francisco ghost tour.

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