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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

International Association of Hydrogeologists strengthens ties with IGS
2015-03-31

 

From the left are: Prof Neil Heideman, Dean of the Faculty of Natural and Agricultural Sciences, Mr Shammy Puri, secretary-general of the International Association of Hydrogeologists, and Prof Danie Vermeulen, Director of the Institute for Groundwater Studies.
Photo: Supplied

The Institute for Groundwater Studies (IGS) is in the process of establishing a SADC Groundwater Management Institute, sponsored by the World Bank. To coincide with this process, the IGS received a visit from Mr Shammy Puri, the secretary-general of the International Association of Hydrogeologists (IAH).

“The aim of the visit was to further cooperation between the IAH and IGS regarding transboundary aquifers in the SADC region,” said Prof Danie Vermeulen, Director at the IGS.

The International Association of Hydrogeologists (IAH/AIH) is a scientific and educational charitable organisation for scientists, engineers, water managers, and other professionals working in the fields of groundwater resource planning, management, and protection.  The IAH is the leading international society for the science and practice of hydrogeology, and is a globally recognised information source and facilitator for the transfer of groundwater knowledge.

Mr Shammy Puri was elected Secretary-General of IAH in 2008, and chaired the Commission on Transboundary Aquifer Resources Management (TARM) from 1998 to 2011.

During his visit, Mr Puri also presented lectures to the postgraduate students at the Institute on Transboundary Aquifers. He was also invited by the Dean of the Faculty of Natural and Agricultural Sciences, Prof Neil Heideman, to present the faculty prestige lecture later this year.

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