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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

Qwaqwa Campus launches transdisciplinary Afromontane Research Unit
2015-06-09

Dr Dipane Hlalele, Assistant Dean in the Faculty of Education on the Qwaqwa Campus; Dr Anofi Ashafa, Dean of the Faculty of Natural and Agricultural Sciences on the Qwaqwa Campus; Prof Corli Witthuhn, Vice-Rector: Research; Prof Sechaba Mahlomaholo, Dean in the Faculty of Education; Dr Geofrey Mukwada, Head of the Department of Geography; Dr Aliza le Roux, Head of the Department of Zoology and Entomology; Prof Prakash Naidoo, Campus Principal and Dr Elsa Crause, Academic Head on the Qwaqwa Campus.

The Qwaqwa Campus of the University of the Free State in the Eastern Free State boasts of one of the most beautiful and distinctive surroundings that will play a crucial role in fostering research in the under-researched area of the montane communities. This was revealed during the recent launch of the Afromontane Research Unit (ARU), the UFS flagship transdisciplinary research programme.

“This flagship programme has been in the making for about four years as our Qwaqwa Campus is set in a very interesting, unique, and mountainous place. The programme gained the momentum when the National Research Foundation (NRF) challenged each university to come up with their own single niche research area that would give them a unique research identity”, Prof Corli Witthuhn, Vice-Rector: Research, said during the launch.

”The Unit will develop the campus’s research capacity as we have already seen a huge increase in the research outputs by Qwaqwa staff. The campus already has seven scholars in the Vice-Chancellor's Prestige Scholars Programme (PSP), and there is notable excitement here. The Afromontane Research Unit will add to that research excitement as well”, she added.

Prof Witthuhn revealed that an application for the funding of the ARU had already been submitted to the NRF, and a positive response was awaited.

The PSP is an accelerated scholarship of junior UFS researchers in their first five years post-PhD. The prestige scholars participate in an intensive programme of support that includes international placement and intensive mentoring.

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