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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

UFS International Studies Group makes history come alive globally
2015-07-15

The UFS International Studies Group comprises students who are top achievers drawn from South Africa, Southern and Central Africa and even further afield.
Photo: Charl Devenish

Headed by Prof Ian Phimister, the UFS International Studies Group comprises six master’s, twelve PhD and twelve postdoctoral fellows who concentrate their research endeavours on African, Imperial and Global History. All of these students are top achievers drawn from South Africa, Southern and Central Africa and even further afield. This group, now only in its third year, presents a phenomenal research output with an international reach.

In the course of the past year alone, five PhD students secured fully-funded invitations to conferences and research seminars in South Africa, Britain, as well as the Netherlands. Our researchers have been publishing articles globally and securing visiting fellowships and research awards.

Dr Clement Masakure and Dr Rosa Williams won funding to present papers at the International Network for the History of Hospitals. Tinashe Nyamunda won a prestigious three-month Cadbury Fellowship at the University of Birmingham in the United Kingdom. Anusa Daimon has been selected as a 2015 Harry Guggenheim award winner, which covers workshop attendance in Nairobi, Kenya.

From among the group, twelve articles have been published or accepted for publication in refereed scholarly journals, as well as four chapters in edited books. Book reviews written by these highly-motivated graduate students, have appeared or will appear in leading national and international academic journals. Remarkably, seven book reviews appearing in one particular issue of African Studies Review, were written by this group. Four scholarly monographs have recently been published, or soon will be. One PhD student is the joint editor (with a senior Canadian academic) of a forthcoming study on Zimbabwe’s controversial Marange diamond mining industry.

Another outstanding researcher, Dr Lindie Koorts, won the award for the best debut writer at the 2014 Woordfees for her book ‘DF Malan and the Rise of Afrikaner Nationalism’ – the first non-fiction writer to achieve this. Her book now appears on the longlist for the 2015 Alan Paton Award.

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