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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

UFS academics nominated for NSTF Awards
2016-05-19

Description: Zakkie Pretorius Tags: Zakkie Pretorius

Prof Zakkie Pretorius

Prof Zakkie Pretorius and Prof Maryke Labuschagne, researchers in the Department of Plant Sciences at the University of the Free State (UFS), have been nominated for the 2016 awards of the National Science and Technology Forum (NSTF) in partnership with South32.

The NSTF awards recognise outstanding contributions to science, engineering, and technology (SET) and innovation for researchers and other SET-related professionals. The awards are referred to as the ‘Science Oscars’ of South Africa, as they are the largest, most comprehensive, and most sought-after national Awards of their kind. Among other things, the NSTF aims to celebrate, recognise, and reward excellence in science, engineering, technology and innovation within the SET sectors.

Prof Pretorius was short-listed as a finalist in the category: Lifetime Award for an outstanding contribution to SET and innovation by an individual over a period of 15 years or more.

Description: Maryke Labuschagne Tags: Maryke Labuschagne

Prof Maryke Labuschagne

He works on crop quality and disease resistance in the field crops research chair headed by Prof Labuschagne in the Department of Plant Sciences. Disease-resistance breeding is a continuation of the internationally-acclaimed wheat rust research that Prof Pretorius has been conducting during his career.

Prof Labuschagne is a finalist in the category: Special Award in Crop Science and Food Security. This is a special award by the NSTF this year, in honour of the 2016 International Year of Pulses, as declared by the United Nations.

Prof Labuschagne heads the research chair on quality and diseases in field crops at the UFS. Her research, and that of her students, focuses on the genetic improvement of food security crops in Africa, including such staples as maize and cassava.

At a Gala Dinner on 30 June 2016, the finalists will be honoured before the Minister of Science and Technology, the patron of the occasion, announces the winners of the 2015/2016 awards.   

 

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