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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

Plant researcher receives prestigious Grain SA award
2016-10-21

Description: Plant researcher receives prestigious Grain SA award Tags: Plant researcher receives prestigious Grain SA award

Prof Zakkie Pretorius from the UFS Department
of Plant Sciences with Andries Theron,
vice-chairman of Grain SA. Theron presented
the award to Prof Pretorius at Grain SA’s a
nnual gala event, which was held in Midrand
this year.
Photo (read more): Supplied
Photo (spotlight): Charl Devenish

A researcher in the Department of Plant Sciences at the University of the Free State (UFS), Prof Zakkie Pretorius, received the prestigious Grain Producer of the Year Inspiration Award during the annual gala event of Grain SA. Grain SA provides strategic commodity support and services to South African grain producers to assist in the sustainability of the sector.

This award is presented to individuals or organisations in appreciation of excellent contributions to the grain industry. These individuals have also achieved extraordinary results in their respective fields.

Research in the interest of food security
Prof Pretorius has been involved in research on plant diseases and food crops for the past 38 years. His research focus, rust diseases in crops, is especially important for food security.  

According to Prof Pretorius, who collaborates with an extensive network of specialist colleagues, his research covers a variety of topics including rust race identification, the discovery of new resistance genes, characterisation of resistance expression in plants, and the mapping of genes. His focus is not only on wheat, but he also researches rust diseases in oats, barley, maize, dry beans, lentils, sunflowers, and soybeans.

Breeding of rust-resistant varieties gains scientific basis
Locally, he has been contracted for several years by the Winter Grain Trust to annually evaluate commercial wheat cultivars and elite germplasm. This information is regularly passed on to the relevant seed companies and breeders, and is also included in the production guidelines of the Agricultural Research Council for disease risk assessment. His research places the breeding and selection of rust-resistant varieties on a solid scientific foundation. A living collection of rust fungus cultures and a large germplasm collection are maintained at the UFS under his supervision.

 

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