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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

New building on UFS Qwaqwa Campus makes provision for research on environmental problems
2015-12-11

The new Geography and Physics Building on the Qwaqwa Campus

Student numbers in Geography and Physics on the Qwaqwa Campus of the University of the Free State have escalated over the past five years. This has resulted in a need for more space for these two departments.

The acute and persistent shortage of lecturing space has been a major stumbling block on the campus, with only four of the Natural Sciences departments - Chemistry, Physics, Plant Sciences, and Zoology and Entomology – able to fit into the Natural Sciences building. To solve the problem, a separate facility for both the Geography and the Physics departments was built.

The new complex, which includes lecture rooms, laboratories, and offices, places the Department of Physics on the ground floor because the weight of some of the laboratory equipment. The Department of Geography is on the first floor.

The Department of Geography places strong emphasis on montane research. Research is being conducted on environmental problems in the Maluti-a-Phofung area. This research encompass in situ and ex situ conservation of paleontological resources, with the aim of setting up a GIS-based environmental management system, as well as the role of local cultures in promoting regional tourism.

The Department of Physics places emphasis on changing and improving community perceptions of electricity and electronics. The major part of the research has been in the field of solid-state physics, and, more specifically, on nanophosphors and other luminescent nanoparticles.

The building is in the north-eastern corner of the campus, opposite the Faculty of Natural and Agricultural Sciences.

The project was completed in 2015.

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