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19 July 2018 Photo Supplied
AEVGI advances Next-Generation Sequencing in Africa
Prof George Armah, Noguchi Memorial Institute for Medical Research, Ghana; Prof Carl Kirkwood, Bill and Melinda Gates Foundation, USA; Cornelius Hagenmeier, Director: Internationalisation, UFS; Prof Gert van Zyl, Dean: Health Sciences; Dr Martin Nyaga, Senior Lecturer in the NGS Unit; Prof Joyce Tsoka-Gwegweni, Vice-Dean: Health Sciences; Dr Glen Taylor, Senior Director: Research and Development; Prof Jeffrey Mphahlele, Vice-President, South African Medical Research Council.

The inaugural edition of the University of the Free State (UFS) Next-Generation Sequencing (NGS) Data and Bioinformatics Workshop, hosted by the UFS-NGS Unit in the UFS Faculty of Health Sciences, marked a new beginning for the advancement of NGS in Africa under the auspices of the African Enteric Viruses Genome Initiative (AEVGI), which was recently funded by the Bill and Melinda Gates Foundation.

The AEVGI will generate rotavirus genomes at the UFS-NGS Unit to investigate the long-term effects of the introduction of the monovalent RV1 vaccine in three African countries – Ghana, Malawi, and South Africa.

The workshop attracted over 90 participants from 15 national and international institutions, with organisations from seven different countries as well as company representatives attending the event. The workshop kicked off with a courtesy call to the Rector and Vice-Chancellor, Prof Francis Petersen, followed by a stakeholder meeting with the executive management of the UFS.

The funding was secured through an award to the principal investigator, Dr Martin Nyaga, and sub-awards to co-investigators, Dr Khuzwayo Jere, Dr Francis Dennis, and Dr Valentine Ndze. According to attendee evaluations of the workshop, the remarkable performance of the workshop instructors was outstanding. Through practical sessions, participants were equipped with knowledge on how to apply several tools of genetic data analysis, using the rotavirus genome as a model to construct and interpret different genomic datasets.

A total of 65 students attended the hands-on workshop, the majority of which were from South African higher-education institutions. The organisers are grateful to the sponsors, particularly to the Bill and Melinda Gates Foundation and the University of the Free State, for making the workshop a success. Whitehead Scientific and the South African Medical Research Council also played a major role in the success of the workshop. The local organising committee consisted of Dr Martin Nyaga (host, convener and chair), Dr Saheed Sabiu (secretary), and Mr Stephanus Riekert (principal ICT support).

News Archive

New online journal repository launched during research week
2016-08-03

Description: Open access Tags: Open access

Open Access core team.

The annual research week marked the official launch of KovsieJournals published on KovsieScholar, the UFS output repository.  Library and information Services and the office of the Vice Rector: Research, Prof Corli Witthuhn, hosted the week-long events of 26-29 July 2016 on the Bloemfontein Campus. 

KovsieScholar is the UFS’s research repository that collects, preserves, and distributes open access digital material. It is an important tool for preserving the university’s legacy, facilitating digital preservation and scholarly communication. It aims to increase the university’s global visibility, the impact and profiles of its researchers, and contribute to the preservation and sharing of knowledge. Currently, it holds journals published since 2010.

The main launch event of 27 July was opened at the Equitas Building’s Senate Hall by Mr Charlie Molepo, Deputy-Director: LIS Research and Scholarly Communications, who also presented the project background.  Prof Jonathan Jansen, Vice-Chancellor and Rector said it is a great initiative that will allow anyone to have access to UFS research outputs anywhere in the world, something he is glad to see happening during his term.

A roundtable discussion brought together more than ten senior professors and heads of department to explore topics such as Open Access and its benefits and pitfalls, centralisation of institutional research output, and the future publishing platform of KovsieJournals, amongst others.  Research Week will end with training for Open Access and Centre for Teaching and Learning’s core teams.

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