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13 September 2022 | Story Leonie Bolleurs | Photo Stephen Collett
Prof Trudi O’Neill, Professor in the UFS Department of Microbiology and Biochemistry, delivered her inaugural lecture on the topic: Rotavirus: New strategies to outsmart an old foe.

Prof Trudi O’Neill, Professor in the Department of Microbiology and Biochemistry at the University of the Free State (UFS) – whose research over the past 14 years is geared towards the development of a low-cost rotavirus vaccine for use in Africa – recently delivered her inaugural lecture on the Bloemfontein Campus on the topic: Rotavirus: New strategies to outsmart an old foe, a very appropriate topic for the time we live in. Most of her work is funded by the German Research Foundation.

She is a founding member and since 2016 Chairperson of the African Research Network for Neglected Tropical Diseases (ARNTD). This African-based network aims to empower current and future African researchers to support evidence-based control and elimination of neglected tropical diseases. 

Prof O’Neill, known among her colleagues as being passionate about her work, also investigates rotavirus-host interactions and strain diversity in both humans and animals. 

She obtained her PhD in Molecular Virology at the University of Pretoria in 2001 and started her career at the Onderstepoort Veterinary Institute. In 2012, she joined the Department of Microbiology and Biochemistry at the UFS.

Burden of the disease

“Rotavirus, a zoonotic infection, competes with adenovirus, cholera, and shigella as the biggest cause (27% of diarrhoea cases) of severe dehydrating diarrhoea in children under five,” says Prof O'Neill.

Repeated infections by rotavirus or other diarrhoea-causing pathogens can cause a number of long-term complications, such as intestinal damage and inflammation, nutrient loss, and malabsorption, resulting in malnutrition and subsequently a weak immune system. Malnutrition at a young age can lead to metabolic diseases such as diabetes in the long run.

She says vaccine effectiveness is dependent on many factors. Those suffering from malnutrition in poor countries with inadequate sanitation and who are living in close contact with animals, are most at risk of severe dehydrating diarrhoea caused by rotavirus infections. Low-income countries saw an efficiency rate of less than 50% compared to middle-income countries' 75% efficiency rate. She says, however, that vaccines have had the biggest public health impact in low-income countries due to the high burden of disease. 

Prof O’Neill’s presentation included a review of the research that had been conducted, including diversity studies using genome characterisation (sequencing of more than 100 strains, most of which from Mozambique), lipid studies, and investigations into the use of virus-like particles (VLPs) and subunit proteins as vaccine candidates. Production of VLPs and proteins was explored in insect cells and yeast, exploiting the Biobanks SA Yeast culture collection housed in the Department of Microbiology and Biochemistry. A subunit vaccine containing parts (proteins) of the virus that causes the disease and broad-spectrum antiviral vaccine candidates are some of the strategies she is investigating to combat the long-term effects of rotavirus infections. 

Cost and safety

Decades of work in the rotavirus field led to the licensing of the first vaccines to fight the infection in the late 2000s. Prof O’Neill says that there has been a 65% decline in rotavirus-related deaths since 2000, with vaccines being a major contributor to this. 

Two of the concerns she pointed out in terms of the vaccine were about safety and cost. For persons with severe immune deficiencies, the vaccine can cause vaccine-derived rotavirus infection.

Addressing the concern about cost, Gavi, a public–private global health partnership that aims to increase access to immunisation in poor countries, has done great work in providing rotavirus vaccine support to low-income countries. 

News Archive

Fracking in the Karoo has advantages and disadvantages
2012-05-25

 

Dr Danie Vermeulen
Photo: Leatitia Pienaar
25 May 2012

Fracking for shale gas in the Karoo was laid bare during a public lecture by Dr Danie Vermeulen, Director of the Institute for Groundwater Studies (IGS). He shared facts, figures and research with his audience. No “yes” or “no” vote was cast. The audience was left to decide for itself.

The exploitation of shale gas in the pristine Karoo has probably been one of the most debated issues in South Africa since 2011.
 
Dr Vermeulen’s lecture, “The shale gas story in the Karoo: both sides of the coin”, was the first in a series presented by the Faculty of Natural and Agricultural Science under the theme “Sustainability”. Dr Vermeulen is a trained geo-hydrologist and geologist. He has been involved in fracking in South Africa since the debate started. He went on a study tour to the USA in 2011 to learn more about fracking and he visited the USA to further his investigation in May 2012.
 
Some of the information he shared, includes:

- It is estimated that South Africa has the fifth-largest shale-gas reserves in the world, following on China, the USA, Argentina and Mexico.
- Flow-back water is stored in sealed tanks and not in flow-back dams.
- Fracturing will not contaminate the water in an area, as the drilling of the wells will go far deeper than the groundwater aquifers. Every well has four steel casings – one within the other – with the gaps between them sealed with cement.
- More than a million hydraulic fracturing simulations took place in the USA without compromising fresh groundwater. The surface activities can cause problems because that is where man-made and managerial operations could cause pollution.
- Water use for shale-gas exploration is lower than for other kinds of energy, but the fact that the Karoo is an arid region makes the use of groundwater a sensitive issue. Dr Vermeulen highlighted this aspect as his major concern regarding shale-gas exploration.
- The cost to develop is a quarter of the cost for an oil well in the Gulf of Mexico.
- Dolerite intrusions in the Karoo are an unresearched concern. Dolerite is unique to the South African situation. Dolerite intrusion temperatures exceed 900 °C.

He also addressed the shale-gas footprint, well decommissioning and site reclamation, radio activity in the shale and the low possibility of seismic events.
 
Dr Vermeulen said South Africa is a net importer of energy. About 90% of its power supply is coal-based. For continued economic growth, South Africa needs a stable energy supply. It is also forecast that energy demand in South Africa is growing faster than the average global demand.
 
Unknowns to be addressed in research and exploration are the gas reserves and gas needs of South Africa. Do we have enough water? What will be the visual and social impact? Who must do the exploration?
 
“Only exploration will give us these answers,” Dr Vermeulen said.

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