Latest News Archive

Please select Category, Year, and then Month to display items
Previous Archive
20 June 2023 | Story Prof Anthony Turton | Photo Supplied
Prof Anthony Turton
Prof Anthony Turton is a water expert in the Centre for Environmental Management, University of Free State (UFS)

 


 

Opinion article by Prof Anthony Turton, Centre for Environmental Management, University of Free State


The public was recently shocked to hear of the loss of life due to cholera in the Hammanskraal area. Panic swiftly fanned the flames of discontent as efforts were made to find evidence that cholera is lurking in other parts of the country. We now have a confirmed death rate of 32, with two coming from the Free State, proving that the cholera crisis is wider than Hammanskraal.

The loss of life is tragic, but have we learned anything from history that might inform the present?

The epicentre of the 2023 cholera crisis is undoubtedly Hammanskraal, with a smoking gun being the Rooiwal Wastewater Treatment Works (WWTW) where a clear trail of forensic evidence of corruption, malfeasance and tender rigging exists. But, at the time of writing, no clear linkage has been claimed by any investigating authority. The news cycle has passed, so maybe the hope is that public interest will fade, before demands are made for a clear pronouncement on discovery of the epicentre?

Let me expand on this by using a tool accepted in the procedure and science of investigation. That tool is known as Occam’s Razor, and it basically says that when solving a complex problem with competing hypothetical solutions, the most probable solution is the one with the least number of assumptions. Stated differently, it tells us that the simplest explanation is statistically likely to be the correct one. 

How does this apply to the 2023 cholera crisis?

Let us start with fundamental facts that cannot be disputed. In 1831 a new and yet unknown epidemic hit London. It triggered panic that spread like wildfire. This led to the discovery of cholera as a new disease, alongside typhoid and scarlet fever. Doctors were unfamiliar with the new disease, adding to the sense of panic. In 1837 an outbreak of influenza, followed a year later by an outbreak of typhoid, wreaked havoc in the crowded slums of London. This resulted in the publication of a paper entitled The Sanitary Conditions of the Labouring Population by Edwin Chadwick in 1842. This caused Chadwick to be appointed to the board of the Sanitary Commission of London. The rudimentary sewage systems caused pollution of the River Thames, which was also the source of drinking water for the city of London. The dominant theory at that time was that disease was caused by “miasma” or bad air. This became known as “mala airia”, the root of the word malaria. A new theory started to emerge, challenging the dominant belief in miasma, which gained traction in the Middle Ages after it was observed that illness was associated with smelly conditions. The new theory was based on the observation that disease was transmitted from person to person and became known as contagion theory. Sanitation engineering was based on these two theories. It was believed that by removing the source of foul air associated with miasma, and restricting the movement of people with infection rooted in the experiences of the Black Death, the impact of disease could be limited. 

In 1849 there was a second outbreak of cholera, followed by a larger event in 1854, showing weaknesses in the prevailing sanitation engineering approach. John Snow, a physician, published a paper in 1849 entitled On the Mode of Communication of Cholera, in which he proposed that it was not transmitted by miasma (bad air), but rather by water. Armed with this idea, he used the 1854 cholera epidemic to conduct a statistical survey of all known casualties. He was thus able to isolate the source of the outbreak to one water point – a well with a hand pump – in Broad Street. Further investigation revealed a sewer carrying untreated human waste that was leaking into the well. 

However, as with all new scientific discoveries, there was scepticism from William Farr, in his capacity as head of the General Register Office. Farr challenged Snow’s statistical finding, thereby preventing proposed restoration work for the entire sewage system. It therefore took a fourth outbreak of cholera in 1866 to convince Farr of the veracity of Snow’s discovery. William Farr then published a monograph showing that the mortality was extremely high for people drawing water from the Old Ford Reservoir in East London. With Farr’s endorsement of Snow’s initial discovery, the theory that cholera was contracted by direct contact with sewage was accepted. 

With this fact now established, it took another catastrophe to bring about change. In the summer of 1858, the smell of sewage in the Thames River became so bad, that Parliament was forced to close. This event came to be known as the Great Stink and it catalysed the desire by the political leadership to intervene with policy that enabled the launching of what became the greatest engineering project of the era – a modern sewer system for London. That task fell to Joseph Bazalgette, Chief Engineer of London’s Metropolitan Board of Works. The new sewage system was commissioned in 1865, three decades after the first cholera outbreak that caused massive loss of human life.   

We therefore know, without the need to reinvent the wheel, that cholera is caused by sewage in the rivers.

Green Drop Report

Let us now apply Occam’s Razor to this known fact by taking the next leap in logic. In 2013, the last Green Drop report allowed by Nomvula Mokonyane, in her capacity as Minister of Water and Sanitation, indicated that 248 of 824 WWTWs (30%) were in a critical condition. She chose unilaterally to supress reporting of this reality as it might impact negatively on the public perception of the ruling party in an election cycle. In April 2022 the reinstated Green Drop Report indicated that 334 out of 850 WWTWs were in critical condition. That was a total of 39% of all WWTWs in 90 municipalities. The situation has significantly deteriorated. 

We know that we collectively discharge over 5 billion litres of sewage daily into our rivers. We also know that about 15% of that is treated to a satisfactory standard, the rest of which comes from the 334 dysfunctional WWTWs. However, we now also know that 41% of our drinking water systems (Blue Drop Watch Report) are non-compliant on microbiological parameters, with a further 9% being in poor condition. This means that 50% of the drinking water is non-compliant on microbiological standards. A red flag indeed.

So, to summarise, we have almost 40% of all WWTWs dysfunctional, and 50% of all potable water non-compliant in terms of parameters associated with risk of infection of one sort or another.

Let us now apply Occam’s Razor to reach a plausible conclusion as to the source of the problem. We know that on 16 February 2001, Exception No 1918B was issued in response to a crisis at Rooiwal. This failed to correct the problem, so on 28 September 2011, a Plan of Action for Rooiwal Wastewater Works was presented for approval. On 3 October 2011 the Strategic Executive Director of Public Works and Infrastructure Development signed a document, copied to the City Manager and Executive Mayor of Tshwane. Based on this document, a State of Emergency was declared on 7 October 2011.  This provides clear indication of a crisis needing priority management, as well as naming names of who knew what and when they knew it. On 3 November 2011 DR6041/2011 was issued by the Department of Water and Sanitation. This is entitled Request for Deviation from Official Procurement Process. This enabled procurement of services to bypass the normal tender procedure.

What we learn from the history of cholera

We can therefore say with confidence that the procurement procedures for engineering services arising from a situation so grave that a state of emergency had to be declared, lies at the heart of the 2023 cholera crisis. We also know that water was being provided by tanker services, so the most logical place to investigate the cause is the source of water from which those tankers were filled. Now we jump into the unknown, because the investigation has been focussed on the drinking water supply. But we know from observed cases in KwaZulu-Natal, that tankers are operated by syndicates who get paid per bowser delivered, and they often source their water in the river rather than waiting for hours in a queue at the municipal standpipe. We can therefore say, with the confidence provided by Occam, that the most probable cause of the infection was contaminated water delivered in tankers but sourced from the river. We know of course that Rooiwal WWTW has been discharging thousands of tons of sludge into a wetland along the Apies, the very same river from which the tankers have probably been sourcing their water.

What we learn from the history of cholera is that resistance to implement fundamental human health management practices, first learned in London in the 1800s, costs human lives. Instead of waving their hands and feigning incredulity by focussing only on the drinking water system, investigators ought to look at the tankers sourced via a corrupted procurement process. Remember Occam’s Razor tells us that the simplest solution to any complex problem is most probably the correct solution.

News Archive

Inaugural lecture: Prof Robert Bragg, Dept. of Microbial, Biochemical and Food Biotechnology
2006-05-17



Attending the inaugural lecture were in front from the left Prof Robert Bragg (lecturer at the Department of Microbial, Biochemical and Food Biotechnology) and Frederick Fourie (Rector and Vice-Chancellor).  At the back from the left were Prof James du Preez (Departmental Chairperson:  Department of Microbial, Biochemical and Food Biotechnology) and Prof Herman van Schalkwyk (Dean: Faculty of Natural and Agricultural Sciences). Photo: Stephen Collett
 

A summary of an inaugural lecture delivered by Prof Robert Bragg at the University of the Free State:

CONTROL OF INFECTIOUS AVIAN DISEASES – LESSONS FOR MAN?

Prof Robert R Bragg
Department of Microbial, Biochemical and Food Biotechnology
University of the Free State

“Many of the lessons learnt in disease control in poultry will have application on human medicine,” said Prof Robert Bragg, lecturer at the University of the Free State’s (UFS) Department of Microbial, Biochemical and Food Biotechnology during his inaugural lecture.

Prof Bragg said the development of vaccines remains the main stay of disease control in humans as well as in avian species.  Disease control can not rely on vaccination alone and other disease-control options must be examined.  

“With the increasing problems of antibiotic resistance, the use of disinfection and bio security are becoming more important,” he said.

“Avian influenza (AI) is an example of a disease which can spread from birds to humans.  Hopefully this virus will not develop human to human transmission,” said Prof Bragg.

According to Prof Bragg, South Africa is not on the migration route of water birds, which are the main transmitters of AI.  “This makes South Africa one of the countries less likely to get the disease,” he said.

If the AI virus does develop human to human transmission, it could make the 1918 flu pandemic pale into insignificance.  During the 1918 flu pandemic, the virus had a mortality rate of only 3%, yet more than 50 million people died.

Although the AI virus has not developed human-to-human transmission, all human cases have been related to direct contact with infected birds. The mortality rate in humans who have contracted this virus is 67%.

“Apart from the obvious fears for the human population, this virus is a very serious poultry pathogen and can cause 100% mortality in poultry populations.  Poultry meat and egg production is the staple protein source in most countries around the world. The virus is currently devastating the poultry industry world-wide,” said Prof Bragg.

Prof Bragg’s research activities on avian diseases started off with the investigation of diseases in poultry.  “The average life cycle of a broiler chicken is 42 days.  After this short time, they are slaughtered.  As a result of the short generation time in poultry, one can observe changes in microbial populations as a result of the use of vaccines, antibiotics and disinfectants,” said Prof Bragg.   

“Much of my research effort has been directed towards the control of infectious coryza in layers, which is caused by the bacterium Avibacterium paragallinarum.  This disease is a type of sinusitis in the layer chickens and can cause a drop in egg product of up to 40%,” said Prof Bragg.

The vaccines used around the world in an attempt to control this disease are all inactivated vaccines. One of the most important points is the selection of the correct strains of the bacterium to use in the vaccine.

Prof Bragg established that in South Africa, there are four different serovars of the bacterium and one of these, the serovar C-3 strain, was believed to be unique to Southern Africa. He also recently discovered this serovar for the first time in Israel, thus indicating that this serovar might have a wider distribution than originally believed.

Vaccines used in this country did not contain this serovar.  Prof Bragg established that the long term use of vaccines not containing the local South African strain resulted in a shift in the population distribution of the pathogen.

Prof Bragg’s research activities also include disease control in parrots and pigeons.   “One of the main research projects in my group is on the disease in parrots caused by the circovirus Beak and Feather Disease virus. This virus causes serious problems in the parrot breeding industry in this country. This virus is also threatening the highly endangered and endemic Cape Parrot,” said Prof Bragg.

Prof Bragg’s research group is currently working on the development of a DNA vaccine which will assist in the control of the disease, not only in the parrot breeding industry, but also to help the highly endangered Cape Parrot in its battle for survival.

“Not all of our research efforts are directed towards infectious coryza or the Beak and Feather Disease virus.  One of my Masters students is currently investigating the cell receptors involved in the binding of Newcastle Disease virus to cancerous cells and normal cells of humans. This work will also eventually lead to a possible treatment of cancer in humans and will assist with the development of a recombinant vaccine for Newcastle disease virus,” said Prof Bragg.

We are also currently investigating an “unknown” virus which causes disease problems in poultry in the Western Cape,” said Prof Bragg.
 
“Although disinfection has been extensively used in the poultry industry, it has only been done at the pre-placement stage. In other words, disinfectants are used before the birds are placed into the house. Once the birds are placed, all use of disinfectants stops,” said Prof Bragg.

“Disinfection and bio security can be seen as the ‘Cinderella’ of disease control in poultry.  This is also true for human medicine. One just has to look at the high numbers of people who die from hospital-acquired infections to realise that disinfection is not a concept which is really clear in human health care,” said Prof Bragg.

Much research has been done in the control of diseases through vaccination and through the use of antibiotics. “These pillars of disease control are, however, starting to crumble and more effort is needed on disinfection and bio security,” said Prof Bragg.

Prof Bragg has been working in close co-operation with a chemical manufacturing company in Stellenbosch to develop a unique disinfectant which his highly effective yet not toxic to the birds.

As a result of this unique product, he has developed the continual disinfection program for use in poultry. In this program the disinfectant is used throughout the production cycle of the birds. It is also used to ensure that there is excellent pre-placement disinfection.

“The program is extensively used for the control of infectious diseases in the parrot-breeding industry in South Africa and the product has been registered in 15 countries around the world with registration in the USA in the final process,” said Prof Bragg.

“Although the problem of plasmid mediated resistance to disinfectants is starting to rear its ugly head, this has allowed for the opening of a new research field which my group will hopefully exploit in the near future,” he said.

 

We use cookies to make interactions with our websites and services easy and meaningful. To better understand how they are used, read more about the UFS cookie policy. By continuing to use this site you are giving us your consent to do this.

Accept