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28 August 2024 | Story André Damons | Photo Supplied
Prof Patricks Voua Otomo
Prof Patricks Voua Otomo, Associate Professor and subject head of Department of Zoology and Entomology at the University of the Free State (UFS).

In an effort to alleviate the burden of water contamination, Prof Patricks Voua Otomo, Associate Professor in the Department of Zoology and Entomology at the University of the Free (UFS) is researching how mushrooms can be used to significantly reduce the toxicity of water.

The degradation of river systems in South Africa has been linked primarily to the inability of municipalities to properly treat wastewater. According to the 2022 Green Drop Report, out of the existing 850 wastewater systems across 90 municipalities, only 23 (or less than 3%) qualified for the Green Drop Certification. This underscores the depth and breadth of the wastewater treatment crisis in South Africa and its potential implications for human and environmental health.

In 2030, billions of people will still lack access to safe water, sanitation and hygiene services – the most basic human need for health and well-being. Target 6.1 of the United Nations (UN) Sustainable Development Goals (SDGs) – SDG 6 – aims to achieve universal and equitable access to safe and affordable drinking water for all, while target 6.3 is also looking to improve water quality by reducing pollution, eliminating dumping and minimising release of hazardous chemicals and materials, halving the proportion of untreated wastewater and substantially increasing recycling and safe re-use globally by 2030.

These challenges inform Prof Voua Otomo’s research, which focuses on the drivers of river pollution in the Qwaqwa region, ways to mitigate/remediate their effects, and the development of simple and quick methods to assess water quality. His research, which is part of the UFS 2023 Impact Report, has drawn attention to localised incidences of terrestrial and aquatic contamination linked to sewage sludge management by local wastewater treatment plants.

Using mycofiltration to reclaim the quality of contaminated water

In Qwaqwa, wastewater treatment plants, however, are not the only source of river pollution, as a significant amount of river pollutants emanates directly from the communities that often dispose of their household waste directly into the waterways. This has led to unacceptable levels of pharmaceuticals such as biphenyl-4-ylacetic acid (an anti-inflammatory), efavirenz (an HIV medicine), and carbamazepine (an epilepsy medicine) ending up in rivers.

To attempt to reclaim the quality of contaminated water, ongoing research in Prof Voua Otomo’s laboratory involves the use of ‘mycofiltration’, i.e., the use of fungal mycelia for the purpose of water filtration. This relatively untapped eco-friendly technology is attracting more attention, yet its real merits are only now being established and documented scientifically.

“Various species of fungi have been explored in bioremediation studies, and those belonging to the Pleurotus genus (edible mushrooms) have demonstrated an exceptional ability in the biosorption of contaminants,” says Prof Voua Otomo.

In his field of research, Prof Voua Otomo says snails can be used as bioindicators (i.e., organisms used to assess the health of an environment or ecosystem, particularly by indicating the presence and impact of pollutants or other environmental stressors) or biomonitors (i.e., organisms or a biological systems used to assess the health of an environment, particularly by detecting changes in the levels of pollutants or other harmful substances).

“We designed a mycofilter made of mycelia from the mushroom species Pleurotus ostreatus and filtrated water contaminated with the organic insecticide imidacloprid and the inorganic chemical iron (III). The results showed that mycofiltration could remove up to 94% of iron (III) and 31% of imidacloprid.

“Mycofiltration works through a process called adsorption, which is the process where molecules, ions, or particles from a gas, liquid, or dissolved solid, stick to a surface. This happens when the adsorbate (the substance being adsorbed) attaches to the adsorbent (the surface it adheres to),” Prof Voua Otomo explains.

Mycofiltration viable and affordable for water remediation

This research is the brainchild of Sanele Mnkandla, a final-year PhD student in Prof Voua Otomo’s laboratory. “A few years ago, she suggested looking at mycofiltration as a means to improve the quality of contaminated water. Freshwater snails were the most suitable organisms to help assess the improvement of the water quality after mycofiltration,” explains Prof Voua Otomo.

According to him, they are currently exploring ways to upscale the mycofilter to improve the quality of larger bodies of water, including rivers. The duration of the process depends on the size of the filter, the amount of water to be filtered and the targeted chemicals. Bigger filters, explains Prof Voua Otomo, will filter larger amounts of water over a relatively longer time whereas smaller ones will be saturated quickly. The process could last from minutes to days.

“We have published a technical note on the topic and a proof of concept. We are currently testing this technology using wastewater effluent in the Qwaqwa region. We are also exploring local applications in rainwater harvesting.

“Mycofiltration is certainly a viable and affordable option for water remediation, which can find a wide range of applications in South Africa,” he says. 

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News Archive

UFS study on cell development in top international science journal
2008-09-16

A study from the University of the Free State (UFS) on how the change in the packaging of DNA with cell development influenced the expression of genes, will be published in this week’s early edition of the prestigious international, peer-reviewed science journal, the Proceeding of the National Academy of Sciences of the USA (PNAS).

The PNAS journal has an impact factor of 10, which means that studies published in the journal are, on average, referred to by ten other scientific studies in a two year period. The South African Journal of Science, by comparison, has an impact factor of 0.7.

The UFS study, funded by the Wellcome Trust and the National Research Foundation (NRF), looked at how the change in the packaging of DNA with cell development influenced the expression of genes. It is very relevant to research on stem cells, an area of medicine that studies the possible use of undifferentiated cells to replace damaged tissue.

Prof. Hugh Patterton, of the Department of Microbial, Biochemical and Food Biotechnology at the UFS, who led the study, said: "We are extremely proud of this study. It was conceived in South Africa, it was performed in South Africa, the data were analysed in South Africa, and it was published from South Africa."

When a gene is expressed, the information encoded in the gene is used to manufacture a specific protein. In eukaryotes, which include humans, there is approximately 1m of DNA, containing the genes, in every cell. This length of DNA has to fit into a cell nucleus with a diameter of only about 10 micrometer. In order to fit the DNA into such a small volume, eukaryotic cells wrap their DNA onto successive protein balls, termed nucleosomes. Strings of nucleosomes, resembling a bead of pearls, is folded into a helix to form a chromatin fiber. The study from the UFS investigated how the binding of a specific protein, termed a linker histone, that binds to the length of DNA between nucleosomes, influenced the formation of the chromatin fiber and also the activity of genes.

"We found that the linker histone bound to chromatin in yeast, which we use as a model eukaryote, under conditions where virtually all the genes in the organism were inactive. It was widely believed that the binding of the linker histone caused the inactivation of genes. We studied the relationship between the amount of linker histone bound in the vicinity of each gene and the expression of that gene for all the genes in yeast, using genomic techniques. We made the surprising discovery that even through the linker histone preferentially bound to genes under conditions where the genes were shut off, this inactivation of genes was not caused by the binding of the linker histone and folding of the chromatin,” said Prof. Patterton.

He said: “Instead our data strongly suggested that the observed anti-correlation was due to the movement of enzymes along the DNA molecule, involved in processing the information in genes for the eventual manufacture of proteins. This movement of enzymes displaced the linker histones from the DNA. This finding now requires a rethink on aspects of how packaging of DNA influences gene activity."

Prof. Patterton said that his research group, using the Facility for Genomics and Proteomics as well as the Bioinformatics Node at the UFS, was currently busy with follow-up studies to understand how other proteins in nucleosomes affected the activities of genes, as well as with projects to understand how chemicals found in red wine and in green tea extended lifespan. "We are certainly having a marvelous time trying to understand the fundamental mechanisms of life, and the UFS is an exciting place to be if one was interested in studying life at the level of molecules," he said.


Media Release
Issued by: Lacea Loader
Assistant Director: Media Liaison
Tel: 051 401 2584
Cell: 083 645 2454
E-mail: loaderl.stg@ufs.ac.za  
18 September 2008
 

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