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11 December 2019 | Story Leonie Bolleurs
Aids read more

According to Global Statistics, there were approximately 37,9 million people across the globe with HIV/Aids in 2018. They also state that in 2018, an estimated 1,7 million individuals worldwide became newly infected with HIV. 

In the city of Masvingo, Zimbabwe, Claris Shoko is a Statistics lecturer at the Great Zimbabwe University. In her PhD thesis at the University of the Free State (UFS) in the Department of Mathematical Statistics and Actuarial Sciences, she presented the argument that the inclusion of both the CD4 cell count and the viral-load counts in the monitoring and management of HIV+ patients on antiretroviral therapy (ART), is helping in reducing mortality rates, leading to improved life expectancy for HIV/Aids patients. 

She received her doctoral degree at the December UFS Graduation Ceremonies, with her thesis: Continuous-time Markov modelling of the effects of treatment regimens on HIV/Aids immunology and virology. 

CD4 cell count and viral-load count

Dr Shoko explains: “When the human immunodeficiency virus (HIV) enters the human body, the virus attacks the CD4 cells in their blood. This process damages CD4 cells, causing the number of white blood cells in the body to drop, making it difficult to fight infections.”

“Clinical markers such as CD4 cell count and viral-load count (number of HIV particles in a ml of blood) provide information about the progression of HIV/Aids in infected individuals. These markers fully define the immunology and the virology of HIV-infected individuals, thereby giving us a clear picture of how HIV/Aids evolve within an individual.”

Dr Shoko continues: “The development of highly active antiretroviral therapy (HAART) has helped substantially to reduce the death rate from HIV. HAART reduces viral load-count levels, blocking replication of HIV particles in the blood, resulting in an increase of CD4 cell counts and the life expectancy of individuals infected with HIV. This has made CD4 cell counts and viral-load counts the fundamental laboratory markers that are regularly used for patient management, in addition to predicting HIV/Aids disease progression or treatment outcomes.”

In the treatment of HIV/Aids, medical practitioners prescribe combination therapy to attack the virus at different stages of its life cycle, and medication to treat the opportunistic infections that may occur. “The introduction of combined antiretroviral therapy (cART) has led to the dramatic reduction in morbidity and mortality at both individual level and population level,” states Dr Shoko.

Once HIV-positive patients are put on cART, the effectiveness of treatment is monitored after the first three months and a further follow-up is done every six months thereafter. During the monitoring stages, CD4 cell count and viral load is measured. Patients are also screened for any tuberculosis (TB) co-infection and checked for any signs of drug resistance. These variables determine whether or not there is a need for treatment change. 

She continues: “Previous studies on HIV modelling could not include both CD4 cell count and viral load in one model, because of the collinearity between the two variables. In this study, the principal component approach for the treatment of collinearity between variables is used. Both variables were then included in one model, resulting in a better prediction of mortality than when only one of the variables is used.”

“Viral-load monitoring helps in checking for any possibilities of virologic failure or viral rebound, which increases the rate of mortality if not managed properly. CD4 cell count then comes in to monitor the potential development of opportunistic infections such as TB. TB is extremely fatal, but once detected and treated, the survival of HIV/Aids patients is assured,” Dr Shoko explains.

Markov model

She applied the Markov model in her study. The model, named after the Russian mathematician Andrey Markov, represents a general category of stochastic processes, characterised by six basic attributes: states, stages, actions, rewards, transitions, and constraints. 

According to Dr Shoko, Markov models assume that a patient is always in one of a finite number of discrete states, called Markov states. All events are modelled as transitions from one state to another. Each state is assigned a utility, and the contribution of this utility to the overall prognosis depends on the length of time spent in each state. For example, for a patient who is HIV positive, these states could be HIV+ (CD4 cell count above 200 cells/mm3), Aids (CD4 cell count below 200 cells/mm3) and Dead.

“Markov models are ideal for use in HIV/Aids studies, because they estimate the rate of transition between multiple-disease states while allowing for the possible reversibility of some states,” says Dr Shoko, quoting Hubbard and Zhou.

“Relatively fewer HIV modelling studies include a detailed description of the dynamics of HIV viral load count during stages of HIV disease progression. This could be due to the unavailability of data on viral load, particularly from low- and middle-income countries that have historically relied on monitoring CD4 cell counts for patients on ART because of higher costs of viral load-count testing,” Dr Shoko concludes

News Archive

Prof Danie Vermeulen appointed as dean of the Faculty of Natural and Agricultural Sciences
2016-03-18

Description: Prof Danie Vermeulen Tags: Prof Danie Vermeulen

As the new dean of the UFS Faculty of Natural and Agricultural Sciences, Prof Danie Vermeulen is resolute to place this faculty on the world map.
Photo: Anja Aucamp

The Council of the University of the Free State (UFS) approved the appointment of Prof Danie Vermeulen as dean of the Faculty of Natural and Agricultural Sciences during its meeting on 11 March 2016.

“Prof Vermeulen brings to the position of dean a set of formidable research and leadership achievements and a track-record of commitment to equity and diversity in the sciences," said Prof Jonathan Jansen, Vice-Chancellor and Rector of the UFS.

“It is a great honour that was bestowed on me to lead the faculty and it makes me feel very humble," said Prof Vermeulen.

Fifteen years ago, Prof Vermeulen joined the UFS as a researcher and lecturer. From 2007-2009 he filled the role of acting director of the UFS Institute for Groundwater Studies to subsequently be appointed as not only the director of this institute, but also associate Professor in Geohydrology.

As an alumnus, Prof Vermeulen has strong ties to the UFS. He acquired a BSc Honours, MSc, and PhD Cum Laude in Geohydrology here.This pursuit of excellence also transpires in his aspirations for the faculty’s future. “My vision is that the faculty becomes the best in South Africa in various departments – and recognised throughout Africa, especially in the applied sciences. In addition, the faculty will actively interact with world-leading universities, particularly in the hard sciences.”

Prof Vermeulen is a member of the Executive Committee of the Free State branch of the Groundwater Division of South Africa, member of the Executive Council of the International Mine Water Association, as well as council member at the Fossil Fuel Foundation of South Africa. In the past, he has held membership at the International Association of Hydrogeologists, South African Council for Natural Scientific Professions, Ground Water Division of the Geological Society of South Africa, Water Institute of South Africa, FETWATER Groundwater Initiative, and Editorial Board member of the scientific journal, Water SA.

Prof Vermeulen served as the acting dean for six months prior to his appointment. His appointment commences on 1 April 2016 for a period of five year.

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