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22 January 2020 | Story Leonie Bolleurs | Photo Leonie Bolleurs
Soil Confrence at UFS
At the Combined Congress with the theme ‘Basic and applied sciences – Fundamentals of sustainable agriculture’, were from the left: Prof Klaus Kellner, Prof Prakash Naidoo, Dr Cobus Botha from the Agriculture Research Council, Prof Vaughan Hattingh, and Mr Matome Ramokgopa.

“We are at the beginning of a new decade that will in all likelihood be pivotal for aspects such as food security, climate change, and the sustainable use of natural resources – aspects that the societies you represent are of course keenly involved with – and in terms of which you can play an increasingly valuable role.” 

These were the words of Vice-Rector: Operations at the University of the Free State (UFS), Prof Prakash Naidoo, on opening a Combined Congress of the Soil Science Society of South Africa (SSSSA), the South African Society of Crop Production (SASCP), the Southern African Weed Science Society (SAWSS), and the Southern African Society for Horticultural Sciences (SASHS).

The UFS Department of Soil, Crop and Climate Sciences is hosting the congress, with scientific content of four disciplines (soil, crop, weed, and horticulture) presented by both local and international guest speakers.

The theme of this year’s congress taking place on the UFS Bloemfontein Campus, is Basic and applied sciences – Fundamentals of sustainable agriculture.

Prof Naidoo continues: “It has been predicted that the world will need almost double the current food supply by 2050 to feed an ever-increasing world population. This clearly makes the scientific work done in the agricultural sector and the organisations affiliated with it, more vital than ever. We need to do what we can to ensure food security and sustainability.”

“A congress like yours is an opportunity to tap into the perspectives and research results of collaborators from different fields, and from different levels of skill and experience – with the aim of ultimately benefiting wider communities.”

Leader in agriculture sector

Prof Vaughan Hattingh, representing SASHS (Chief Executive Officer of Citrus Research International); Mr Matome Ramokgopa, representing SASCP (General Manager of Enza Zanden SA); and Prof Klaus Kellner, representing SSSSA (Department of Botany at the North-West University), delivered the combined opening address.

Prof Hattingh, speaking on ‘Industry–University partnership opportunity road ahead for horticultural research’, says citrus is a major horticultural product internationally and the biggest horticultural export from South Africa. The citrus industry, the second largest exporter of citrus in the world, generates R20 bn per year and is the biggest funder of research in this area. 

Prof Hattingh states that university partnerships, developing science to assist the industry, are key. “The future of horticultural industries and horticultural research at universities depends on successful university-industry partnerships.”

Mr Ramokgopa talked about ‘Innovative solutions for vegetable seed production for a growing population’, saying that Enza Zanden employed several techniques in vegetable production in response to the needs of retailers and consumers. These include smaller tomatoes (for snacking purposes), smaller leaf size of lettuce (thus a smaller area for decay), plastic-free packaging of cucumber with a longer shelf life, and more uniform onions (suitable for onion rings). 

Prof Kellner focused on ‘Scientifically sound policies and practices to ensure food security and sustainable agriculture’. He said: “It is getting warmer in Southern Africa and Europe. We need to realise it and adapt practices accordingly.”

More discussions on sustainable agriculture

Other interesting topics covered at the congress include, ‘Developing propagation technologies for indigenous plants used in the natural products industry’; ‘The influence of foliar and application rate of nitrogen fertiliser on seed and oil yield of canola’; ‘Sweet potato production in sacks: potential utilisation of limited space in rural, urban and peri-urban areas’; ‘The efficacy of postharvest wax application in the reduction of chilling injury incidence in lemon fruit’; and ‘Herbicide use within the commercial forestry sector in South Africa’.

Congress attendees can also look forward to the ‘Soil fertility and crop nutrition symposium: principles and practices’ on Wednesday 22 January 2020.

The congress kicked off on 21 January, and will come to an end on Thursday 23 January 2020. For more information on the sessions, see programme.

News Archive

Newly operational sequencing unit in genomics at UFS
2016-09-09

Description: Next Generation Sequencing  Tags: Next Generation Sequencing

Dr Martin Nyaga and his research assistant,
Tshidiso Mogotsi in the Next Generation
Sequencing Laboratory.
Photo: Charl Devenish

The Next Generation Sequencing (NGS) unit at the UFS was established as an interdisciplinary facility under the Directorate for Research Development, Faculty of Health Sciences and Faculty of Natural and Agricultural Sciences.

The aim of the NGS facility is to aid internal and external investigators undertaking studies on Deoxyribonucleic acid (DNA) sequencing, assembly and bioinformatics approaches using the more advanced Illumina MiSeq NGS platform.

The NGS unit became operational in 2016 and is managed by Dr Martin Nyaga and administered through the office of the Dean, Faculty of Health Sciences, under the leadership of Prof Gert Van Zyl. Dr Nyaga has vast experience in microbial genomics, having done his PhD in Molecular Virology.

He has worked and collaborated with globally recognised centres of excellence in Prokaryotic and Eukaryotic genomics, namely the J. Craig Venter Institute and the Laboratory of Viral Metagenomics, Rega Institute, among others.

The unit has undertaken several projects and successfully generated data on bacterial, viral and human genomes. Currently, work is ongoing on bacterial and fungal metagenomics studies through 16S rRNA sequencing.

In addition, the unit is also working on plasmid/insert sequencing and whole genome sequencing of animal and human rotaviruses. The unit has capacity to undertake other kinds of panels like the HLA, Pan-cancer and Tumor 15 sequencing, among others.

Several investigators from the UFS including but not limited to Prof Felicity Burt, Prof Wijnand Swart, Dr Frans O’Neil, Dr Trudi O'Neill, Dr Charlotte Boucher, Dr Marieka Gryzenhout and Dr Kamaldeen Baba are actively in collaboration with the NGS unit.

The unit has also invested in other specialised equipment such as the M220 Focused-ultrasonicator (Covaris), 2100 Bioanalyzer system (Agilent) and the real-time PCR cycler, the Rotor-Gene Q (Qiagen), which both the UFS and external investigators can use for their research.

Investigators working on molecular and related studies are encouraged to engage with Dr Nyaga on how they would like to approach their genomics projects at the UFS NGS unit. 

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