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08 October 2020 | Story Leonie Bolleurs | Photo Supplied
Dr Cornel Bender
Dr Cornel Bender received her PhD qualification at the virtual graduation ceremonies in October. The title of her thesis is: Stem rust resistance in South African wheat and triticale.

The rapid distribution of disease-causing organisms such as Ug99, a wheat stem-rust pathotype, pointed out just how vulnerable global cereal production is to disease outbreaks.

These cereals include wheat, barley, rye, oats, triticale, rice, maize, and millet and are one of the most important food sources for human consumption.

According to Dr Cornel Bender, the projected world population of 10 billion in 2057 requires a growth of more than 40% in cereal production. Wheat is grown on more hectares than any other cereal and is one of the most important sources of calories for humans. However, the growth rate of wheat yields has declined from the 1960s to the 1990s. Therefore, it is essential to increase global wheat production.

“With the regular appearance of more aggressive stem rust pathotypes in South Africa, there is a constant need to discover new sources of resistance, understand the genetic base of presently deployed sources in wheat, triticale and barley cultivars, and to manipulate the deployment of resistant sources through a more sustainable approach,” says Dr Bender.

Her PhD thesis, titled: Stem rust resistance in South African wheat and triticale, includes various fundamental aspects for the effective management of stem rust in South Africa.

Dr Bender is a Professional Officer in the Division of Plant Pathology in the Department of Plant Sciences, who received her PhD at the virtual graduation ceremonies in October.

Innovative and cost effective

Her promotors, Prof Zakkie Pretorius, Research Fellow, and Dr Willem Boshoff, Senior Lecturer in the Department of Plant Sciences, believe that she used an innovative approach to develop a cost-effective phenotyping method to select for more durable resistance types in a controlled greenhouse environment.

“In the past, results obtained from field trials used to assess adult plants for stem-rust resistance, were often influenced by abiotic factors, were seasonable in nature, expensive, and time consuming; therefore, the development of a dependable greenhouse screening system provides an important additional instrument for rust research,” says Dr Bender.

She adds that the greenhouse technique is used worldwide to screen for adult plant resistance and contribute to save time and money.

Broadening our knowledge

“Inheritance studies were undertaken to determine the genetic base of stem-rust resistance in selected South African wheat and triticale cultivars (developed from wheat/rye crosses) through seedling analysis as well as greenhouse and fieldwork,” she says.

Dr Bender believes the use and development of different resistance screening methods, the elucidation of host genetics, as well as the use of histological and microscopic methods to study early resistance responses, broaden our knowledge and understanding of stem-rust resistance in South African wheat and triticale cultivars.

Ultimately, rust researchers, grain producers, and also the general public – through access to their daily bread – will benefit from her study.

News Archive

Newly operational sequencing unit in genomics at UFS
2016-09-09

Description: Next Generation Sequencing  Tags: Next Generation Sequencing

Dr Martin Nyaga and his research assistant,
Tshidiso Mogotsi in the Next Generation
Sequencing Laboratory.
Photo: Charl Devenish

The Next Generation Sequencing (NGS) unit at the UFS was established as an interdisciplinary facility under the Directorate for Research Development, Faculty of Health Sciences and Faculty of Natural and Agricultural Sciences.

The aim of the NGS facility is to aid internal and external investigators undertaking studies on Deoxyribonucleic acid (DNA) sequencing, assembly and bioinformatics approaches using the more advanced Illumina MiSeq NGS platform.

The NGS unit became operational in 2016 and is managed by Dr Martin Nyaga and administered through the office of the Dean, Faculty of Health Sciences, under the leadership of Prof Gert Van Zyl. Dr Nyaga has vast experience in microbial genomics, having done his PhD in Molecular Virology.

He has worked and collaborated with globally recognised centres of excellence in Prokaryotic and Eukaryotic genomics, namely the J. Craig Venter Institute and the Laboratory of Viral Metagenomics, Rega Institute, among others.

The unit has undertaken several projects and successfully generated data on bacterial, viral and human genomes. Currently, work is ongoing on bacterial and fungal metagenomics studies through 16S rRNA sequencing.

In addition, the unit is also working on plasmid/insert sequencing and whole genome sequencing of animal and human rotaviruses. The unit has capacity to undertake other kinds of panels like the HLA, Pan-cancer and Tumor 15 sequencing, among others.

Several investigators from the UFS including but not limited to Prof Felicity Burt, Prof Wijnand Swart, Dr Frans O’Neil, Dr Trudi O'Neill, Dr Charlotte Boucher, Dr Marieka Gryzenhout and Dr Kamaldeen Baba are actively in collaboration with the NGS unit.

The unit has also invested in other specialised equipment such as the M220 Focused-ultrasonicator (Covaris), 2100 Bioanalyzer system (Agilent) and the real-time PCR cycler, the Rotor-Gene Q (Qiagen), which both the UFS and external investigators can use for their research.

Investigators working on molecular and related studies are encouraged to engage with Dr Nyaga on how they would like to approach their genomics projects at the UFS NGS unit. 

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