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30 November 2021 | Story Leonie Bolleurs | Photo Supplied
Prof Johan Meyer, Senior Professor in the Department of Mathematics and Applied Mathematics, says he is looking forward to learning from others in the field during this collaboration.

What do trees, black holes, earthquakes, and time structures have in common? 

The answer to this question is that these, in one way or the other, form the focus of some of the abstracts delivered during the Annual Congress of the South African Mathematical Society. The society has as its main objective the advancement of mathematics in South Africa. 

The Department of Mathematics and Applied Mathematics at the University of the Free State (UFS), in conjunction with the South African Mathematical Society (SAMS 2021), is hosting the 64th Annual Congress of the society this week (29 November to 1 December 2021).

Prof Johan Meyer, Senior Professor in the department, says the congress, which is being conducted online, is focusing on all aspects of mathematics research, including history and teaching.

Learning from others in the field

The congress, which aims to share the latest research results in mathematics, will be attended by staff and students from universities across South Africa as well as abroad. “Anyone from the public is, of course, welcome to attend or even share their results if they are also involved in mathematics research,” adds Prof Meyer. 

He says that he is looking forward to learning from others in the field during this collaboration. 

The congress will include discussions on more than 120 abstracts, covering category theory, algebra, topology, logic; functional analysis and operator theory; finite groups and combinatorial structures; graph theory and combinatorics; lie symmetries and nonlinear differential equations; and applied and numerical mathematics.

Array of interesting topics presented

“It is important in many areas of science and engineering to predict and to simulate rare, random events, the occurrence of which may have negative or even catastrophic consequences. Examples include internet server overflows, mechanical breakdowns, floods, and financial crashes. Rare events can also have a positive effect, triggering for example chemical reactions or driving genetic evolution via random mutations.” Prof Hugo Touchette from Stellenbosch University will be shedding some light on this interesting topic in his presentation on Predicting and simulating rare events.

Prof Jeandrew Brink, Associate Professor in the Department of Mathematics and Applied Mathematics at the UFS, is presenting a plenary session on the topic Determining the geometry of strong field space-times in spite of tacitly assuming the answer during every measurement. In South Africa, state-of-the art pulsar timing data from the MeerKAT telescope will make a considerable contribution to conducting GR orbital tests. Prof Brink comments on how pulsar timing tests differ from tests using gravitational wave detectors, as well as what we can learn from the framework already employed to perform pulsar timing measurements.

News Archive

Newly operational sequencing unit in genomics at UFS
2016-09-09

Description: Next Generation Sequencing  Tags: Next Generation Sequencing

Dr Martin Nyaga and his research assistant,
Tshidiso Mogotsi in the Next Generation
Sequencing Laboratory.
Photo: Charl Devenish

The Next Generation Sequencing (NGS) unit at the UFS was established as an interdisciplinary facility under the Directorate for Research Development, Faculty of Health Sciences and Faculty of Natural and Agricultural Sciences.

The aim of the NGS facility is to aid internal and external investigators undertaking studies on Deoxyribonucleic acid (DNA) sequencing, assembly and bioinformatics approaches using the more advanced Illumina MiSeq NGS platform.

The NGS unit became operational in 2016 and is managed by Dr Martin Nyaga and administered through the office of the Dean, Faculty of Health Sciences, under the leadership of Prof Gert Van Zyl. Dr Nyaga has vast experience in microbial genomics, having done his PhD in Molecular Virology.

He has worked and collaborated with globally recognised centres of excellence in Prokaryotic and Eukaryotic genomics, namely the J. Craig Venter Institute and the Laboratory of Viral Metagenomics, Rega Institute, among others.

The unit has undertaken several projects and successfully generated data on bacterial, viral and human genomes. Currently, work is ongoing on bacterial and fungal metagenomics studies through 16S rRNA sequencing.

In addition, the unit is also working on plasmid/insert sequencing and whole genome sequencing of animal and human rotaviruses. The unit has capacity to undertake other kinds of panels like the HLA, Pan-cancer and Tumor 15 sequencing, among others.

Several investigators from the UFS including but not limited to Prof Felicity Burt, Prof Wijnand Swart, Dr Frans O’Neil, Dr Trudi O'Neill, Dr Charlotte Boucher, Dr Marieka Gryzenhout and Dr Kamaldeen Baba are actively in collaboration with the NGS unit.

The unit has also invested in other specialised equipment such as the M220 Focused-ultrasonicator (Covaris), 2100 Bioanalyzer system (Agilent) and the real-time PCR cycler, the Rotor-Gene Q (Qiagen), which both the UFS and external investigators can use for their research.

Investigators working on molecular and related studies are encouraged to engage with Dr Nyaga on how they would like to approach their genomics projects at the UFS NGS unit. 

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