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27 September 2021 | Story Leonie Bolleurs | Photo Supplied
Eddie Smit, Tercia Strydom, and Prof Johan van Tol testing the hydrophobicity of soils directly after an experimental fire.

The main driving force behind climate change is the emission of greenhouse gases through human activities, says Prof Linus Franke, Associate Professor and Head of the Department of Soil, Crop and Climate Sciences at the University of the Free State. 

“Carbon dioxide is the biggest culprit, accounting for 72% of the global warming effect, followed by methane and nitrous oxide.” 

Too much carbon in the atmosphere

Human activities are the main driver of climate change, mainly by burning fossil fuels such as coal, gas, and oil, with the energy sector, industries, transport, buildings, and agriculture as the biggest emitters of greenhouse gases. 

According to the United Nations, the burning of these fossil fuels generates greenhouse gas emissions that wrap around the earth like a blanket, trapping the heat of the sun and resulting in raised temperatures. According to Prof Franke, it is important to mitigate climate change and prevent a global temperature rise of more than 1,5 degrees Celsius. According to the Intergovernmental Panel on Climate Change (IPCC), we are looking at a temperature increase of around four degrees Celsius by the end of this century, if there are no drastic changes.

With an increase in global warming, we are expecting more disturbances in weather patterns, resulting in further extreme weather conditions such as droughts, floods, and extremely cold/hot conditions. Annually, millions of people lose their lives, livelihoods, and homes due to the effects of global warming.

“The latter has been predicted for a long time, but today it is a common phenomenon. Twenty years ago, climate change was about analysing trends in data sets. Today, to observe climate change, one can just look out of the window. In the past 10 years, climate change has become a reality,” says Prof Franke. 

Although carbon dioxide is one of the biggest contributors to global warming, it has an important role to play in soil health. 

Soil as a major sink of carbon

As plants absorb the carbon dioxide from the atmosphere, enormous amounts of carbon are stored as organic soil matter in the upper two metres of soil. Prof Franke says carbon in the top two metres of soil is 200 times more than the amount that is annually emitted by human activities and three times the amount that is present in the atmosphere or vegetation. 

“Carbon in soil plays an important but underestimated role,” he says. He believes that through proper soil management, humans can control the amount of carbon in the atmosphere. In the long term, this could have a positive effect on climate change.

“Our ultimate aim it to get sufficient amounts of carbon in the soil,” says Prof Franke. His department is involved in several studies to understand soil carbon and carbon sequestration processes. 

Odwa Malongweni collecting a soil sample from exclosures in the Kruger National Park.(Photo: Supplied)

Prof Johan van Tol, Associate Professor in the same department, and postgraduate students are conducting research in the Kruger National Park and the Drakensberg, where they are investigating the best ways to preserve carbon and increase the soil carbon levels. 

He is of the opinion that there are two viable options for storing carbon removed from the atmosphere: the soil and the oceans. “Of the two, storing carbon in the soil is more realistic for most people and companies, as ownership and management of this natural resource can be determined. The potential for storing carbon in the soil is vast, yet poor soil management has led to carbon emissions equal to that of burning oil and coal reserves. Good soil management and restoration of degraded soils, on the other hand, can result in considerable sequestration of atmospheric carbon,” he says. 

According to him, soil and environmental factors determine the carbon storage potential of the soil. He says in the mountainous soils of the Maloti-Drakensberg (MD), the cool climate and high rainfall have resulted in carbon-rich soils. “This area is generally considered a ‘carbon hotspot’, yet little is known about the carbon dynamics of these soils.”

Preliminary results from a project by two of his postgraduate students, Cowan Mc Lean and Jaco Kotze, titled Characterisation of carbon stocks, microbial diversity and degradation of the soils of the Amphitheatre summit, Northern Drakensberg, show that average carbon stocks of the soils are high to very high in the alpine wetlands. They found that poor land management (overgrazing) has resulted in soil and land degradation (e.g., erosion, draining of wetlands, and loss of vegetation and biodiversity). 

“The degraded soils are no longer a ‘sink’ of atmospheric carbon, but become a ‘source’ that releases carbon,” he states. 

He says drastic action is required to restore and protect these important carbon hotspots. 

Today, to observe climate change, one can just look out of the window. In the past 10 years, climate change has become a reality. – Prof Linus Franke
In a study in the Kruger National Park, PhD students Tercia Strydom and Odwa Malongweni are investigating the impact of fires and herbivores on soil quality, including carbon contents. “They found that soil carbon is significantly impacted by fire and herbivores. The changes in vegetation structure due to fire and herbivores are likely to be the key driver of changes in carbon stocks,” says Prof Van Tol. 

An agricultural perspective 

Prof Franke considers carbon as an essential element for farming. “It is important for a healthy farming system,” he says. 

He is conducting a study on high-density grazing, funded by the Regional Universities Forum for Capacity Building in Agriculture. The on-farm performance of different grazing management systems, including selective and high-density grazing, with special reference to the spatial and temporal dynamics of soil carbon, is investigated in this study. 

The research indicates that the grassland biome of South Africa covers about 20% of South Africa’s land surface, with more than half of the biome converted to arable land or greatly disturbed by urban development mining activities. The remaining tracks of the grassland biome are mostly used for livestock grazing on natural grassland. 

 

Prof Johan van Tol, Sue van Rensburg from the South African Environmental Observation Network, and Prof
Linus Franke in the Drakensberg. (Photo:Supplied)

 

He says there are different grazing management strategies of natural grasslands. “In continuous grazing systems, animals are given the opportunity to graze all season long with minimal interference. Rotational grazing systems incorporate periodic deferments, allowing field vegetation to recover in the period when grazing is absent. 

“The more recent strategy of high-density grazing uses large herds, often double or triple the normal stocking densities for an area, grazing intensively on small areas of land for a short period of time, followed by a long resting period of the field.”

“High-density grazing is claimed to improve rangeland productivity by improving soil health, increasing soil carbon stocks to an extent that the emissions of greenhouse gases by livestock may be compensated by soil carbon sequestration, and improving the condition of the vegetation, while enhancing animal productivity on a per area basis. The adoption of high-density grazing can have major impacts on the sustainability and the economics of livestock production. An aim of the research is to quantify to what extent the claims of increasing soil carbon levels under high-density grazing realise under on-farm conditions,” explains Prof Franke.

He trusts that the knowledge generated in this project will be helpful to the broader agricultural sector, providing knowledge on carbon cycling, environmental sustainability, and opportunities for climate change mitigation in the livestock production sector.

Prof Franke is convinced that the protection of grasslands against degradation, while ensuring sufficient, reliable, and sustainable food production, are absolute key components driving the national and global development agenda.


Prof Johan van Tol taking a soil sample on top of the Drakensberg. (Photo: Supplied)

News Archive

Inaugural lecture: Prof Robert Bragg, Dept. of Microbial, Biochemical and Food Biotechnology
2006-05-17



Attending the inaugural lecture were in front from the left Prof Robert Bragg (lecturer at the Department of Microbial, Biochemical and Food Biotechnology) and Frederick Fourie (Rector and Vice-Chancellor).  At the back from the left were Prof James du Preez (Departmental Chairperson:  Department of Microbial, Biochemical and Food Biotechnology) and Prof Herman van Schalkwyk (Dean: Faculty of Natural and Agricultural Sciences). Photo: Stephen Collett
 

A summary of an inaugural lecture delivered by Prof Robert Bragg at the University of the Free State:

CONTROL OF INFECTIOUS AVIAN DISEASES – LESSONS FOR MAN?

Prof Robert R Bragg
Department of Microbial, Biochemical and Food Biotechnology
University of the Free State

“Many of the lessons learnt in disease control in poultry will have application on human medicine,” said Prof Robert Bragg, lecturer at the University of the Free State’s (UFS) Department of Microbial, Biochemical and Food Biotechnology during his inaugural lecture.

Prof Bragg said the development of vaccines remains the main stay of disease control in humans as well as in avian species.  Disease control can not rely on vaccination alone and other disease-control options must be examined.  

“With the increasing problems of antibiotic resistance, the use of disinfection and bio security are becoming more important,” he said.

“Avian influenza (AI) is an example of a disease which can spread from birds to humans.  Hopefully this virus will not develop human to human transmission,” said Prof Bragg.

According to Prof Bragg, South Africa is not on the migration route of water birds, which are the main transmitters of AI.  “This makes South Africa one of the countries less likely to get the disease,” he said.

If the AI virus does develop human to human transmission, it could make the 1918 flu pandemic pale into insignificance.  During the 1918 flu pandemic, the virus had a mortality rate of only 3%, yet more than 50 million people died.

Although the AI virus has not developed human-to-human transmission, all human cases have been related to direct contact with infected birds. The mortality rate in humans who have contracted this virus is 67%.

“Apart from the obvious fears for the human population, this virus is a very serious poultry pathogen and can cause 100% mortality in poultry populations.  Poultry meat and egg production is the staple protein source in most countries around the world. The virus is currently devastating the poultry industry world-wide,” said Prof Bragg.

Prof Bragg’s research activities on avian diseases started off with the investigation of diseases in poultry.  “The average life cycle of a broiler chicken is 42 days.  After this short time, they are slaughtered.  As a result of the short generation time in poultry, one can observe changes in microbial populations as a result of the use of vaccines, antibiotics and disinfectants,” said Prof Bragg.   

“Much of my research effort has been directed towards the control of infectious coryza in layers, which is caused by the bacterium Avibacterium paragallinarum.  This disease is a type of sinusitis in the layer chickens and can cause a drop in egg product of up to 40%,” said Prof Bragg.

The vaccines used around the world in an attempt to control this disease are all inactivated vaccines. One of the most important points is the selection of the correct strains of the bacterium to use in the vaccine.

Prof Bragg established that in South Africa, there are four different serovars of the bacterium and one of these, the serovar C-3 strain, was believed to be unique to Southern Africa. He also recently discovered this serovar for the first time in Israel, thus indicating that this serovar might have a wider distribution than originally believed.

Vaccines used in this country did not contain this serovar.  Prof Bragg established that the long term use of vaccines not containing the local South African strain resulted in a shift in the population distribution of the pathogen.

Prof Bragg’s research activities also include disease control in parrots and pigeons.   “One of the main research projects in my group is on the disease in parrots caused by the circovirus Beak and Feather Disease virus. This virus causes serious problems in the parrot breeding industry in this country. This virus is also threatening the highly endangered and endemic Cape Parrot,” said Prof Bragg.

Prof Bragg’s research group is currently working on the development of a DNA vaccine which will assist in the control of the disease, not only in the parrot breeding industry, but also to help the highly endangered Cape Parrot in its battle for survival.

“Not all of our research efforts are directed towards infectious coryza or the Beak and Feather Disease virus.  One of my Masters students is currently investigating the cell receptors involved in the binding of Newcastle Disease virus to cancerous cells and normal cells of humans. This work will also eventually lead to a possible treatment of cancer in humans and will assist with the development of a recombinant vaccine for Newcastle disease virus,” said Prof Bragg.

We are also currently investigating an “unknown” virus which causes disease problems in poultry in the Western Cape,” said Prof Bragg.
 
“Although disinfection has been extensively used in the poultry industry, it has only been done at the pre-placement stage. In other words, disinfectants are used before the birds are placed into the house. Once the birds are placed, all use of disinfectants stops,” said Prof Bragg.

“Disinfection and bio security can be seen as the ‘Cinderella’ of disease control in poultry.  This is also true for human medicine. One just has to look at the high numbers of people who die from hospital-acquired infections to realise that disinfection is not a concept which is really clear in human health care,” said Prof Bragg.

Much research has been done in the control of diseases through vaccination and through the use of antibiotics. “These pillars of disease control are, however, starting to crumble and more effort is needed on disinfection and bio security,” said Prof Bragg.

Prof Bragg has been working in close co-operation with a chemical manufacturing company in Stellenbosch to develop a unique disinfectant which his highly effective yet not toxic to the birds.

As a result of this unique product, he has developed the continual disinfection program for use in poultry. In this program the disinfectant is used throughout the production cycle of the birds. It is also used to ensure that there is excellent pre-placement disinfection.

“The program is extensively used for the control of infectious diseases in the parrot-breeding industry in South Africa and the product has been registered in 15 countries around the world with registration in the USA in the final process,” said Prof Bragg.

“Although the problem of plasmid mediated resistance to disinfectants is starting to rear its ugly head, this has allowed for the opening of a new research field which my group will hopefully exploit in the near future,” he said.

 

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