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07 September 2021 | Story Leonie Bolleurs

Two lecturers in the Department of Computer Science and Informatics at the University of the Free State (UFS) authored and presented a paper that received the best paper award at this year’s 50th Annual Conference of the Southern African Computer Lecturers’ Association (SACLA). 

SACLA is an association for academics teaching Computer Science, Information Systems, and Information Technology subjects at universities and other higher education institutions in Southern Africa. The Academy of Computer Science and Software Engineering at the University of Johannesburg hosted the conference.

Dr Pakiso Khomokhoana, Lecturer in the Department of Computer Science and Informatics, presented the paper titled Mapping the problem-solving strategies of novice programmers to Polya's framework: SWOT analysis as a bottleneck identification tool. He chose this topic because he was concerned that students (especially novices) are always encountering challenges when it comes to understanding source code and working with related problems.

Prof Liezel Nel, Associate Professor in the Department of Computer Science and Informatics, co-authored the paper with Dr Khomokhoana.

“When the time came to announce the best paper, my heart was panting, and I was thrilled to hear elements of my paper mentioned in preparation for the final announcement,” says Dr Khomokhoana, who reckons that the amount of work one puts into a paper is equivalent to the yield you receive in return.

He is convinced that one should feel the ‘pinch’ for whatever you do in life. Those who are studying can relate to nights spent toiling, headaches, and stressed muscles, with the pain only going away after reaching your goal. “One has to work hard in order to succeed in life,” he states.

He says that being recognised for this paper not only means that he can produce more acceptable research in the future; with the feedback received from reviewers, he can help other upcoming researchers by imparting to them the research skills he obtained over the years.

The UFS also presented a second paper at the conference. Mokotsolane Mase, Lecturer from the same department on the UFS Qwaqwa Campus, presented a paper co-authored by Prof Nel as well, titled: Common code writing errors made by novice programmers: Implications for the teaching of Introductory Programming.

Continuous excellence

The SACLA programme committee is committed to keeping papers earmarked for journal publication to a very high standard. “Since only the top papers are earmarked for journal publication, it was a great achievement to have both papers selected for inclusion in the 2021 publication,” says Prof Nel. 

However, the highlight of the conference for her was when the paper she co-authored with Dr Khomokhoana was recognised as the best paper. 

“What makes this achievement even more special, is that it is the second time in three years that Dr Khomokhoana and I have received this award (2019 and 2021). This is also the third time (since the inception of the ‘best paper award’ in 2014) that I have been the co-author of the best paper.”

“Being recognised at this level for our research in the field of Computer Science Education (CSE) is testament to the quality and importance of the research being conducted within the CSE research group of the UFS Department of Computer Science and Informatics,” she says. 

The way forward

Prof Nel believes in the potential of the CSE research group, and her goal for the next five years is to continue to expand the CSE research group within the department. 

“What I love most about this type of research is that it requires a close integration of the lecturing and research roles of academics. As educational researchers, we must reflect critically on our current teaching and learning practices and consider ways in which we can ultimately provide our students with the best possible learning experiences that will adequately prepare them for the world of work. Mentoring young academics who are interested in this field of research, is one of my biggest passions. By sharing our research at conferences (such as SACLA) and through publication in international journals, we contribute to the scholarship of teaching and learning on a much broader scale,” she says. 

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Inaugural lecture: Prof Robert Bragg, Dept. of Microbial, Biochemical and Food Biotechnology
2006-05-17



Attending the inaugural lecture were in front from the left Prof Robert Bragg (lecturer at the Department of Microbial, Biochemical and Food Biotechnology) and Frederick Fourie (Rector and Vice-Chancellor).  At the back from the left were Prof James du Preez (Departmental Chairperson:  Department of Microbial, Biochemical and Food Biotechnology) and Prof Herman van Schalkwyk (Dean: Faculty of Natural and Agricultural Sciences). Photo: Stephen Collett
 

A summary of an inaugural lecture delivered by Prof Robert Bragg at the University of the Free State:

CONTROL OF INFECTIOUS AVIAN DISEASES – LESSONS FOR MAN?

Prof Robert R Bragg
Department of Microbial, Biochemical and Food Biotechnology
University of the Free State

“Many of the lessons learnt in disease control in poultry will have application on human medicine,” said Prof Robert Bragg, lecturer at the University of the Free State’s (UFS) Department of Microbial, Biochemical and Food Biotechnology during his inaugural lecture.

Prof Bragg said the development of vaccines remains the main stay of disease control in humans as well as in avian species.  Disease control can not rely on vaccination alone and other disease-control options must be examined.  

“With the increasing problems of antibiotic resistance, the use of disinfection and bio security are becoming more important,” he said.

“Avian influenza (AI) is an example of a disease which can spread from birds to humans.  Hopefully this virus will not develop human to human transmission,” said Prof Bragg.

According to Prof Bragg, South Africa is not on the migration route of water birds, which are the main transmitters of AI.  “This makes South Africa one of the countries less likely to get the disease,” he said.

If the AI virus does develop human to human transmission, it could make the 1918 flu pandemic pale into insignificance.  During the 1918 flu pandemic, the virus had a mortality rate of only 3%, yet more than 50 million people died.

Although the AI virus has not developed human-to-human transmission, all human cases have been related to direct contact with infected birds. The mortality rate in humans who have contracted this virus is 67%.

“Apart from the obvious fears for the human population, this virus is a very serious poultry pathogen and can cause 100% mortality in poultry populations.  Poultry meat and egg production is the staple protein source in most countries around the world. The virus is currently devastating the poultry industry world-wide,” said Prof Bragg.

Prof Bragg’s research activities on avian diseases started off with the investigation of diseases in poultry.  “The average life cycle of a broiler chicken is 42 days.  After this short time, they are slaughtered.  As a result of the short generation time in poultry, one can observe changes in microbial populations as a result of the use of vaccines, antibiotics and disinfectants,” said Prof Bragg.   

“Much of my research effort has been directed towards the control of infectious coryza in layers, which is caused by the bacterium Avibacterium paragallinarum.  This disease is a type of sinusitis in the layer chickens and can cause a drop in egg product of up to 40%,” said Prof Bragg.

The vaccines used around the world in an attempt to control this disease are all inactivated vaccines. One of the most important points is the selection of the correct strains of the bacterium to use in the vaccine.

Prof Bragg established that in South Africa, there are four different serovars of the bacterium and one of these, the serovar C-3 strain, was believed to be unique to Southern Africa. He also recently discovered this serovar for the first time in Israel, thus indicating that this serovar might have a wider distribution than originally believed.

Vaccines used in this country did not contain this serovar.  Prof Bragg established that the long term use of vaccines not containing the local South African strain resulted in a shift in the population distribution of the pathogen.

Prof Bragg’s research activities also include disease control in parrots and pigeons.   “One of the main research projects in my group is on the disease in parrots caused by the circovirus Beak and Feather Disease virus. This virus causes serious problems in the parrot breeding industry in this country. This virus is also threatening the highly endangered and endemic Cape Parrot,” said Prof Bragg.

Prof Bragg’s research group is currently working on the development of a DNA vaccine which will assist in the control of the disease, not only in the parrot breeding industry, but also to help the highly endangered Cape Parrot in its battle for survival.

“Not all of our research efforts are directed towards infectious coryza or the Beak and Feather Disease virus.  One of my Masters students is currently investigating the cell receptors involved in the binding of Newcastle Disease virus to cancerous cells and normal cells of humans. This work will also eventually lead to a possible treatment of cancer in humans and will assist with the development of a recombinant vaccine for Newcastle disease virus,” said Prof Bragg.

We are also currently investigating an “unknown” virus which causes disease problems in poultry in the Western Cape,” said Prof Bragg.
 
“Although disinfection has been extensively used in the poultry industry, it has only been done at the pre-placement stage. In other words, disinfectants are used before the birds are placed into the house. Once the birds are placed, all use of disinfectants stops,” said Prof Bragg.

“Disinfection and bio security can be seen as the ‘Cinderella’ of disease control in poultry.  This is also true for human medicine. One just has to look at the high numbers of people who die from hospital-acquired infections to realise that disinfection is not a concept which is really clear in human health care,” said Prof Bragg.

Much research has been done in the control of diseases through vaccination and through the use of antibiotics. “These pillars of disease control are, however, starting to crumble and more effort is needed on disinfection and bio security,” said Prof Bragg.

Prof Bragg has been working in close co-operation with a chemical manufacturing company in Stellenbosch to develop a unique disinfectant which his highly effective yet not toxic to the birds.

As a result of this unique product, he has developed the continual disinfection program for use in poultry. In this program the disinfectant is used throughout the production cycle of the birds. It is also used to ensure that there is excellent pre-placement disinfection.

“The program is extensively used for the control of infectious diseases in the parrot-breeding industry in South Africa and the product has been registered in 15 countries around the world with registration in the USA in the final process,” said Prof Bragg.

“Although the problem of plasmid mediated resistance to disinfectants is starting to rear its ugly head, this has allowed for the opening of a new research field which my group will hopefully exploit in the near future,” he said.

 

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