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31 January 2023 | Story Leonie Bolleurs | Photo Leonie Bolleurs
UFS unveiled new spectrograph
Assisting Prof Richard Gray with the installation of the spectrograph and the polarimeter were the Electronics and Instrumentation departments at both the UFS and the ASU. Left from the spectrograph, are from the left, front: Innes Basson, Head of the Department of Electronics and Instrumentation, Prof Pieter Meintjes, Senior Professor in the Department of Physics, Mark Jackson, Department of Electronics and Instrumentation, Hélène Szegedi, Lecturer in the Department of Physics, and Prof Richard Gray. At the right, from the spectrograph, front, are Natali Matchelt, master’s student, Izak van der Westhuizen, Lecturer in the Department of Physics; Barend Crous, Department of Electronics and Instrumentation; middle: Wian Smit, master’s student, Joleen Barnard, master’s student; back: Kobus Krüger, Department of Electronics and Instrumentation, Henri Roodt, Department of Electronics and Instrumentation; and Dr Hendrik van Heerden, Department of Physics.

The University of the Free State (UFS) is gearing up to be a leading academic institution in astronomical research. The institution successfully mounted a spectrograph with a polarimeter to the Boyden Observatory 1,5-m telescope that will provide scientists with visual access to both the Northern and Southern Hemispheres. 

The instrument, which can be accessed from Boyden, an astronomical research observatory and science education centre a few kilometres outside Bloemfontein, will allow researchers such as the Astrophysics Group at the UFS to do simultaneous polarimetry and spectroscopy of astronomical sources. This is vital for the research they are working on.

Mounting the spectrograph to the telescope and installing the polarimeter completed the upgrade of the 1,5-m telescope and is a leap forward for the astrophysics group at the UFS. The upgraded telescope with the spectropolarimeter, with a valued cost of R1.5 million, will also provide unique opportunities for collaborative research between the Astrophysics Groups at the UFS and researchers from the Appalachian State University (ASU). This adds greatly to the astrophysics research capacity at the university.
 
Prof Richard Gray, who 2019 started with the development of the astronomical spectrograph for the UFS Department of Physics, is a world-renowned expert in stellar spectroscopy, from the Department of Physics and Astronomy at ASU in North Carolina in the US. He was mainly responsible for the development and building of the instrument. 

Prof Pieter Meintjes, Senior Professor from the UFS Department of Physics, describes the moment that installation was completed as a feeling of enormous relief. “It took many hours of hard work, planning and testing to marry the 90-year 1,5-m telescope with the new sophisticated instrument,” he says. 

Adding value to graduate programme

Besides the development and installation of the spectrograph, Prof Gray also designed and built a polarimeter which can be integrated with the spectrograph. When placed inside the spectrograph, this piece of equipment transforms the spectrograph into a spectropolarimeter, giving it additional functionality. “This allows us, for example, to detect and analyse polarised light. It enables us to study the effect of magnetic fields in astronomical sources which introduce various polarisation signatures that can be detected with the polarimeter,” explains Prof Gray.

“I am fascinated by the polarimetric capabilities that we never had before. It is a great step forward,” remarks Prof Meintjes. 

“The Department of Electronics and Instrumentation at the UFS played an enormous role in the building of several components of the instrument that Prof Gray designed, as well as getting the 1.5-m telescope research ready so that the completed instrument could be mounted to the telescope”, says Prof Meintjes

He envisages that the research instrument will be ready for research purposes by March this year. Up till then researchers, graduates, and third-year students will have the opportunity to spend time on the spectrograph to familiarise themselves with it.

polarimeter
Prof Richard Gray posing with the polarimeter. With him is Prof Pieter Meintjes. (Photo: Leonie Bolleurs)


“Once installation is finalised, the UFS will be the only academic institution in South Africa with access to a 1.5-m telescope paired with a spectrograph. This gives us an edge in terms of our astrophysics programme and the training we provide our students. It also adds so much value to our graduate programme,” he says.

New instrument provides much flexibility

The spectrograph offers Prof Meintjes many possibilities for his research, and he is eager to put the instrument to use. To study binary systems as well as the jets of Active Galactic Nuclei (AGN), you need a spectrograph, preferably with polarimetric capabilities. It can also be applied to finding elements at the surface levels of stars so that their chemical composition can be determined.

“In the past, we needed to send our researchers to Sutherland and they were never guaranteed clear skies. Having this facility gives us so much flexibility,” he says.

 

Tsebo Matsoso and Siphephelo Ndlovu

Prof Brian van Soelen from the Department of Physics will be a key user of the spectrograph for his research. He is also playing an important role in terms of postgraduate training and research where the spectrograph is applied. 

Photo: Mart-Mari Duvenhage

  

 


The polarimeter converts the spectrograph to a spectropolarimeter. This instrument, which is mounted on a telescope (in the case of the UFS, it is mounted on the Boyden 1,5-m telescope) enables the user to detect whether radiation from  astronomical objects are polarised and to analyse the level of polarisation of the  light. Scientists can then, for instance, study the effect of magnetic fields in astronomical sources, which introduce various polarisation signatures (typically with a characteristic  level of polarisation).

News Archive

Newly operational sequencing unit in genomics at UFS
2016-09-09

Description: Next Generation Sequencing  Tags: Next Generation Sequencing

Dr Martin Nyaga and his research assistant,
Tshidiso Mogotsi in the Next Generation
Sequencing Laboratory.
Photo: Charl Devenish

The Next Generation Sequencing (NGS) unit at the UFS was established as an interdisciplinary facility under the Directorate for Research Development, Faculty of Health Sciences and Faculty of Natural and Agricultural Sciences.

The aim of the NGS facility is to aid internal and external investigators undertaking studies on Deoxyribonucleic acid (DNA) sequencing, assembly and bioinformatics approaches using the more advanced Illumina MiSeq NGS platform.

The NGS unit became operational in 2016 and is managed by Dr Martin Nyaga and administered through the office of the Dean, Faculty of Health Sciences, under the leadership of Prof Gert Van Zyl. Dr Nyaga has vast experience in microbial genomics, having done his PhD in Molecular Virology.

He has worked and collaborated with globally recognised centres of excellence in Prokaryotic and Eukaryotic genomics, namely the J. Craig Venter Institute and the Laboratory of Viral Metagenomics, Rega Institute, among others.

The unit has undertaken several projects and successfully generated data on bacterial, viral and human genomes. Currently, work is ongoing on bacterial and fungal metagenomics studies through 16S rRNA sequencing.

In addition, the unit is also working on plasmid/insert sequencing and whole genome sequencing of animal and human rotaviruses. The unit has capacity to undertake other kinds of panels like the HLA, Pan-cancer and Tumor 15 sequencing, among others.

Several investigators from the UFS including but not limited to Prof Felicity Burt, Prof Wijnand Swart, Dr Frans O’Neil, Dr Trudi O'Neill, Dr Charlotte Boucher, Dr Marieka Gryzenhout and Dr Kamaldeen Baba are actively in collaboration with the NGS unit.

The unit has also invested in other specialised equipment such as the M220 Focused-ultrasonicator (Covaris), 2100 Bioanalyzer system (Agilent) and the real-time PCR cycler, the Rotor-Gene Q (Qiagen), which both the UFS and external investigators can use for their research.

Investigators working on molecular and related studies are encouraged to engage with Dr Nyaga on how they would like to approach their genomics projects at the UFS NGS unit. 

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