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Prof Abdon Atangana highest-ranked UFS scientist in top 2% of global scientists

09 November 2023 | Story André Damons | Photo SUPPLIED

Prof Atangana — Prof Abdon Atangana, a professor of Applied Mathematics at the University of the Free State (UFS), is the highest-ranked UFS scientist included in Stanford University’s World’s Top 2% Scientists list.

A professor of Applied Mathematics at the University of the Free State (UFS) is again the highest-ranked scientist from the institution included in Stanford University’s annual ranking of the top 2% of scientists in the world.

Prof Abdon Atangana from the UFS’s Institute for Groundwater is ranked number one in applied mathematics, mathematical physics, mathematics, and statistics in the world, and number 260 in all of science, technology, and engineering in the Stanford University World’s Top 2% Scientists list. He is also ranked highest (5 620) of all the UFS scientists included in the career-long data set.

‘Africans in Africa can impact the world’

“The ranking provides us with the impact of our outputs, and it shows that Africans can contribute to the development of science, technology, engineering, and mathematics while still in Africa,” Prof Atangana said. “This also shows that Africans in Africa can have impact on the world. My motivation is to tell the next generation that Africans do not always need to graduate from the top universities of the global North to make a global impact.

“We must work hard to make our African universities reach the same level of those from the global North, such that a student from the global North will wish to enroll in our universities. The development of our continent does not rest on sport, music, and so forth alone, but on science, technology, engineering, and mathematics. Having the best scientists, mathematicians, and engineers in the world in Africa should be the strive of all Africans.”

Three of the UFS’s SARChI Research Chairs have also been included in this list: Prof Hendrik Swart, Chair: Solid-state Luminescent and Advanced Materials (Applied Physics, ranked 40 269 in the single-year dataset); Prof Melanie Walker, Chair: Higher Education and Human Development (ranked 68 337); and Prof Maryke Labuschagne, Chair: Disease Resistance and Quality in Field Crops (Plant Sciences, 165 780).

Other UFS scientists included in the single-year data set are: Prof John M. Carranza (Geology, 4 837); Prof Muhammad Altaf Khan ( Applied Mathematics, 6 366); Prof Maxim Finkelstein (Statistics/ Mathematical Statistics, 63 394); Prof Marianne Reid (School of Nursing, 72 861); Prof John Owen (Centre for Development Support, 103 368); Prof Brownhilder Neneh (Department of Business Management, 73 635); Prof Jorma Hölsä (Research Fellow: Department of Physics, 88 833); Prof Johann Beukes (Philosophy & Classics, 6 547 764); Rian Venter, (829 709); Dr Yuri Marusik (Zoology and Entomology, 553 619); Prof Robert Schall (Department of Mathematical Statistics and Actuarial Science, 276 681); Prof Deborah Posel (Department of Sociology, 275 535); Dr Vijay Kumar (Physics, 274 541); Dr Abhay Prakash Mishra (Pharmacology, 229 625); Prof RE Kroon (Physics, 226 554); Dr Krishnan Anand (Chemical Pathology, 235 300); Prof Andrew Marston (Chemistry, 147 147); Dr Seda Igret Araz (Applied Mathematics,125 824); Prof Jeanet Conradie (Chemistry, 106 521); Prof Louis Scott (Plant Sciences, 73 874); Prof Johan Grobbelaar (Plant Sciences, 97 722); Prof David Motaung (Physics, 53 553); Dr Samuel Nambile Cumber (Health Systems Research and Development, 555 563).

Career-long data set

The Stanford University rankings also include a list of the top 2% of world-class researchers based on citations over their full careers. Scientists are classified into 22 scientific fields and 174 sub-fields. Field- and subfield-specific percentiles are also provided for all scientists with at least five published papers. Career-long data is updated to the end of 2021, and single recent-year data pertain to citations received during calendar year 2021. The selection is based on the top 100 000 scientists by C-score (with and without self-citations) or a percentile rank of 2% or above in the sub-field.

The career-long data set includes the names of:

Prof Carranza (17 466); Prof Scott (55 882); Prof Reid (57 173); Prof Hölsä (64 402); Prof Grobbelaar (71 094); Prof Walker (78 239); Prof Andrew Marston (Chemistry, 84 484); Prof Schall (90 268); HA Snyman (Animal, Wildlife and Grassland Sciences, 96 374); Prof Swart (103 895); Robert WM Frater Cardiovascular Research Centre (111 896); Prof Frederick Kruger (Centre for Environmental Management,117 971); Prof Finkelstein (124 118); Prof Johan Visser (Geology, 125 331); Prof James C du Preez (Biotechnology, 168 841); Prof Posel (172 295); Prof Conradie (178 157); Prof Michael D MacNeil (Dairy and Animal Science, 184 193); Prof Khan (201 101); Prof Owen (262 897).

“The representation of our researchers from a variety of disciplinary domains in this prestigious ranking, is confirmation of their excellence, impact, and the global esteem they hold. UFS is proud to be a home to scholars in our midst who take us incrementally forward as an institution because of their cutting-edge research,” said Prof Vasu Reddy, UFS Deputy Vice-Chancellor: Research and Internationalisation.

Prof Atangana has also been shortlisted as one of the finalists for the prestigious Alkebulan Immigrants Impact Awards (AIIA) 2023, in the South African Flag Carrier category. Voting started on 1 November, and the award ceremony is set to take place on 23 November in Johannesburg.

Prof Melanie Walker, Chair: Higher Education and Human Development, is ranked 68 337 in the single-year data set.

Prof Brownhilder Neneh, from the Department of Business Management and Vice-Dean for Research Engagement and Internationalisation, is ranked 73 635.

Prof Marianne Reid from the School of Nursing is ranked 72 861.

News Archive

Research eradicates bacteria from avocado facility

2017-01-17

Listeria monocytogenes as seen under an electron
microscope. The photo was taken with a transmission
electron microscope at the microscopy unit of the UFS.
Bacteriophages (lollipop-like structures) can be seen
next to the bacterial cells.
Photo: Supplied

“The aim of my project was to identify and characterise the contamination problem in an avocado-processing facility and then to find a solution,” said Dr Amy Strydom, postdoctoral fellow in the Department of Microbial Biochemical and Food Biotechnology at the University of the Free State (UFS).

Her PhD, “Control of Listeria monocytogenes in an Avocado-processing Facility”, aimed to identify and characterise the contamination problem in a facility where avocados were processed into guacamole. Dr Strydom completed her MSc in food science in 2009 at Stellenbosch University and this was the catalyst for her starting her PhD in microbiology in 2012 at the UFS. The research was conducted over a period of four years and she graduated in 2016. The research project was funded by the National Research Foundation.

The opportunity to work closely with the food industry further motivated Dr Strydom to conduct her research. The research has made a significant contribution to a food producer (avocado facility) that will sell products that are not contaminated with any pathogens. The public will then buy food that is safe for human consumption.

What is Listeria monocytogenes?

Listeria monocytogenes is a food-borne pathogenic bacterium. When a food product is contaminated with L. monocytogenes, it will not be altered in ways that are obvious to the consumer, such as taste and smell. When ingested, however, it can cause a wide range of illnesses in people with impaired immune systems. “Risk groups include newborn babies, the elderly, and people suffering from diseases that weaken their immune systems,” Dr Strydom said. The processing adjustments based on her findings resulted in decreased numbers of Listeria in the facility.

The bacteria can also survive and grow at refrigeration temperatures, making them dangerous food pathogens, organisms which can cause illnesses [in humans]. Dr Strydom worked closely with the facility and developed an in-house monitoring system by means of which the facility could test their products and the processing environment. She also evaluated bacteriophages as a biological control agent in the processing facility. Bacteriophages are viruses that can only infect specific strains of bacteria. Despite bacteriophage products specifically intended for the use of controlling L. monocytogenes being commercially available in the food industry, Dr Strydom found that only 26% of the L. monocytogenes population in the facility was destroyed by the ListexP100TM product. “I concluded that the genetic diversity of the bacteria in the facility was too high and that the bacteriophages could not be used as a control measure. However, there is much we do not understand about bacteriophages, and with a few adjustments, we might be able to use them in the food industry.”

Microbiological and molecular characterisation of L. monocytogenes

The bacteria were isolated and purified using basic microbiological culturing. Characterisation was done based on specific genes present in the bacterial genome. “I amplified these genes with polymerase chain reaction (PCR), using various primers targeting these specific genes,” Dr Strydom said. Some amplification results were analysed with a subsequent restriction digestion where the genes were cut in specific areas with enzymes to create fragments. The lengths of these fragments can be used to differentiate between strains. “I also compared the whole genomes of some of the bacterial strains.” The bacteriophages were then isolated from waste water samples at the facility using the isolated bacterial strains. “However, I was not able to isolate a bacteriophage that could infect the bacteria in the facility.

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