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18 November 2024
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Story Jacques Maritz
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Photo Supplied
Muhammad Cassim, a second-year student in the Department of Engineering Sciences in the Faculty of Natural and Agricultural Sciences.
Muhammad Cassim, a second-year student in the Department of Engineering Sciences in the Faculty of Natural and Agricultural Sciences at the University of the Free State, will participate in the winter university project in Pskov, Russia, from 25 November to 9 December 2024.
The winter school aims to strengthen relationships among young engineers and deepen international interaction via skills improvement, joint projects, and social cohesion. The programme boasts a densely packed education block, project block, and cultural block.
Cassim is part of the UFS Grid Related Research Group and actively participates in research centred on complexity science. He intends to complete his BSc Physics degree with Engineering subjects and progress towards postgraduate studies in the UFS Department of Physics.
He is currently working on verifying experimental developments in the field of synchronisation in complex networks. While he has already completed this high-performance computing training in his first year under the leadership of Albert van Eck (Director, UFS E-research), he is looking forward to the masterclasses in holographic modelling, deep learning, direct laser deposition, and database. Closely resembling his current research, he will have the opportunity to gain more experience in the use of set theory and graph theory in solving digital information processing problems.
For more information about international scholarships for study abroad opportunities, contact Mbali Moiketsi in the Office for International Affairs.
Cassim’s student profile is the culmination of the department’s strategy to produce young applied scientists who are subjected to the culture of research during their undergraduate study and could articulate with ease to other departments for postgraduate studies. The department aims to align with the UFS’ Vision 130 by producing competitive students who can operate in the postgraduate paradigm with the digital themes of veterinary science and ecological engineering science.
Research eradicates bacteria from avocado facility
2017-01-17

Listeria monocytogenes as seen under an electron
microscope. The photo was taken with a transmission
electron microscope at the microscopy unit of the UFS.
Bacteriophages (lollipop-like structures) can be seen
next to the bacterial cells.
Photo: Supplied
“The aim of my project was to identify and characterise the contamination problem in an avocado-processing facility and then to find a solution,” said Dr Amy Strydom, postdoctoral fellow in the Department of Microbial Biochemical and Food Biotechnology at the University of the Free State (UFS).
Her PhD, “Control of Listeria monocytogenes in an Avocado-processing Facility”, aimed to identify and characterise the contamination problem in a facility where avocados were processed into guacamole. Dr Strydom completed her MSc in food science in 2009 at Stellenbosch University and this was the catalyst for her starting her PhD in microbiology in 2012 at the UFS. The research was conducted over a period of four years and she graduated in 2016. The research project was funded by the National Research Foundation.
The opportunity to work closely with the food industry further motivated Dr Strydom to conduct her research. The research has made a significant contribution to a food producer (avocado facility) that will sell products that are not contaminated with any pathogens. The public will then buy food that is safe for human consumption.
What is Listeria monocytogenes?
Listeria monocytogenes is a food-borne pathogenic bacterium. When a food product is contaminated with L. monocytogenes, it will not be altered in ways that are obvious to the consumer, such as taste and smell. When ingested, however, it can cause a wide range of illnesses in people with impaired immune systems. “Risk groups include newborn babies, the elderly, and people suffering from diseases that weaken their immune systems,” Dr Strydom said. The processing adjustments based on her findings resulted in decreased numbers of Listeria in the facility.
The bacteria can also survive and grow at refrigeration temperatures, making them dangerous food pathogens, organisms which can cause illnesses [in humans]. Dr Strydom worked closely with the facility and developed an in-house monitoring system by means of which the facility could test their products and the processing environment. She also evaluated bacteriophages as a biological control agent in the processing facility. Bacteriophages are viruses that can only infect specific strains of bacteria. Despite bacteriophage products specifically intended for the use of controlling L. monocytogenes being commercially available in the food industry, Dr Strydom found that only 26% of the L. monocytogenes population in the facility was destroyed by the ListexP100TM product. “I concluded that the genetic diversity of the bacteria in the facility was too high and that the bacteriophages could not be used as a control measure. However, there is much we do not understand about bacteriophages, and with a few adjustments, we might be able to use them in the food industry.”
Microbiological and molecular characterisation of L. monocytogenes
The bacteria were isolated and purified using basic microbiological culturing. Characterisation was done based on specific genes present in the bacterial genome. “I amplified these genes with polymerase chain reaction (PCR), using various primers targeting these specific genes,” Dr Strydom said. Some amplification results were analysed with a subsequent restriction digestion where the genes were cut in specific areas with enzymes to create fragments. The lengths of these fragments can be used to differentiate between strains. “I also compared the whole genomes of some of the bacterial strains.” The bacteriophages were then isolated from waste water samples at the facility using the isolated bacterial strains. “However, I was not able to isolate a bacteriophage that could infect the bacteria in the facility.