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13 November 2020 | Story Leonie Bolleurs | Photo Dr Beanelri Janecke
Five of the multidisciplinary team of researchers and some postgraduate students are determining the depth of soil on the underlying rock layer of the sodic site in the Kruger National Park.

When the Vice-Rector: Research, Prof Corli Witthuhn, invited researchers to apply for funding towards multidisciplinary and interdepartmental projects in 2015, Prof Piet le Roux from the Institute for Groundwater Studies, and the late Dr Fred Kruger from the Centre for Environmental Management took the opportunity and proposed a project to study a catenal ecosystem in the Kruger National Park

According to Dr Beanélri Janecke from the Department of Animal, Wildlife and Grassland Sciences, who led the research team on this project, the team of researchers worked for four years, finding links between the catenal ecosystem (which can be described as a hillslope with different zones forming an environmental gradient from crest to foothill) and processes behind some of its abiotic (non-living) and biotic (living) components. 

Large-scale multidisciplinary research project

All their research on this multidisciplinary project was published in one Special Issue of the Koedoe journal at the end of October 2020. Dr Janecke and Prof Johan van Tol from the Department of Soil, Crop and Climate Sciences were guest editors of this special issue. Dr Llewellyn Foxcroft from SANParks is the Editor-in-Chief of the journal. Other UFS departments involved in this project include the Departments of Genetics; Microbial, Biochemical and Food Biotechnology; Plant Sciences; and Zoology and Entomology.

Dr Janecke says there are 12 articles in this issue and, together with the principal researchers (but excluding postgraduate students), there were 12 authors from the UFS (eight departments and divisions in the Faculty of Natural and Agricultural Sciences) and two from SANParks in associated research collaboration with authors from 14 other institutions. 

This special issue of the Koedoe journal covered research on hydrology, flowpaths, and ground water, including the soil types and properties of different zones on the catena. As stated by Dr Janecke, there are also articles on micro-organisms, fungi, and Fusarium in the soil of the root zone of plants (rhizobiome). 

The environment is degrading fast due to human activities, and there is a dire need for research to look at the bigger picture to find solutions on how to conserve ecosystems and not only smaller parts thereof. – Dr Beanélri Janecke

The journal also comprised articles on the vegetation communities and vegetation structure in the different zones. “Research on how the vegetation recovered post-drought of 2016-2017 and on large and small mammals present on the catena and at the closest waterholes was also published. All of these topics were linked in a discussion article on the catenal ecosystem,” says Dr Janecke.

Multidisciplinary research is not conducted very often on this scale. Many researchers will rather focus on one or a few specific aspects of the ecosystem in a specialist research field. 

SANParks introduced supersite concept

Dr Janecke says scientists from SANParks initiated this supersite concept, where research can be focused on specific areas with similar geology and landscapes in the Kruger National Park to generate multidisciplinary data from separate specialist research fields. 

“Our project went one step further and combined different research fields into one project done on a supersite over the same period. This multidisciplinary project created the opportunity for specialist research fields to be published separately in one special issue, but also to combine the expertise in one project that was summarised in a discussion article.”

She believes that the environment is degrading fast due to human activities, and that there is a dire need for research to look at the bigger picture to find solutions on how to conserve ecosystems and not only smaller parts thereof. “There is a need for a more holistic approach to research, and this special issue provides a framework and basis for similar multidisciplinary studies in future,” states Dr Janecke.

This issue is currently widely marketed on all social platforms of the Koedoe journal and AOSIS Publishers, while a podcast interview is also available at:  https://soundcloud.com/aosis-za/koedoe-interview-podcast-2020 (with permission from Louw Lombaard from AOSIS).

News Archive

Inaugural lecture: Prof Robert Bragg, Dept. of Microbial, Biochemical and Food Biotechnology
2006-05-17



Attending the inaugural lecture were in front from the left Prof Robert Bragg (lecturer at the Department of Microbial, Biochemical and Food Biotechnology) and Frederick Fourie (Rector and Vice-Chancellor).  At the back from the left were Prof James du Preez (Departmental Chairperson:  Department of Microbial, Biochemical and Food Biotechnology) and Prof Herman van Schalkwyk (Dean: Faculty of Natural and Agricultural Sciences). Photo: Stephen Collett
 

A summary of an inaugural lecture delivered by Prof Robert Bragg at the University of the Free State:

CONTROL OF INFECTIOUS AVIAN DISEASES – LESSONS FOR MAN?

Prof Robert R Bragg
Department of Microbial, Biochemical and Food Biotechnology
University of the Free State

“Many of the lessons learnt in disease control in poultry will have application on human medicine,” said Prof Robert Bragg, lecturer at the University of the Free State’s (UFS) Department of Microbial, Biochemical and Food Biotechnology during his inaugural lecture.

Prof Bragg said the development of vaccines remains the main stay of disease control in humans as well as in avian species.  Disease control can not rely on vaccination alone and other disease-control options must be examined.  

“With the increasing problems of antibiotic resistance, the use of disinfection and bio security are becoming more important,” he said.

“Avian influenza (AI) is an example of a disease which can spread from birds to humans.  Hopefully this virus will not develop human to human transmission,” said Prof Bragg.

According to Prof Bragg, South Africa is not on the migration route of water birds, which are the main transmitters of AI.  “This makes South Africa one of the countries less likely to get the disease,” he said.

If the AI virus does develop human to human transmission, it could make the 1918 flu pandemic pale into insignificance.  During the 1918 flu pandemic, the virus had a mortality rate of only 3%, yet more than 50 million people died.

Although the AI virus has not developed human-to-human transmission, all human cases have been related to direct contact with infected birds. The mortality rate in humans who have contracted this virus is 67%.

“Apart from the obvious fears for the human population, this virus is a very serious poultry pathogen and can cause 100% mortality in poultry populations.  Poultry meat and egg production is the staple protein source in most countries around the world. The virus is currently devastating the poultry industry world-wide,” said Prof Bragg.

Prof Bragg’s research activities on avian diseases started off with the investigation of diseases in poultry.  “The average life cycle of a broiler chicken is 42 days.  After this short time, they are slaughtered.  As a result of the short generation time in poultry, one can observe changes in microbial populations as a result of the use of vaccines, antibiotics and disinfectants,” said Prof Bragg.   

“Much of my research effort has been directed towards the control of infectious coryza in layers, which is caused by the bacterium Avibacterium paragallinarum.  This disease is a type of sinusitis in the layer chickens and can cause a drop in egg product of up to 40%,” said Prof Bragg.

The vaccines used around the world in an attempt to control this disease are all inactivated vaccines. One of the most important points is the selection of the correct strains of the bacterium to use in the vaccine.

Prof Bragg established that in South Africa, there are four different serovars of the bacterium and one of these, the serovar C-3 strain, was believed to be unique to Southern Africa. He also recently discovered this serovar for the first time in Israel, thus indicating that this serovar might have a wider distribution than originally believed.

Vaccines used in this country did not contain this serovar.  Prof Bragg established that the long term use of vaccines not containing the local South African strain resulted in a shift in the population distribution of the pathogen.

Prof Bragg’s research activities also include disease control in parrots and pigeons.   “One of the main research projects in my group is on the disease in parrots caused by the circovirus Beak and Feather Disease virus. This virus causes serious problems in the parrot breeding industry in this country. This virus is also threatening the highly endangered and endemic Cape Parrot,” said Prof Bragg.

Prof Bragg’s research group is currently working on the development of a DNA vaccine which will assist in the control of the disease, not only in the parrot breeding industry, but also to help the highly endangered Cape Parrot in its battle for survival.

“Not all of our research efforts are directed towards infectious coryza or the Beak and Feather Disease virus.  One of my Masters students is currently investigating the cell receptors involved in the binding of Newcastle Disease virus to cancerous cells and normal cells of humans. This work will also eventually lead to a possible treatment of cancer in humans and will assist with the development of a recombinant vaccine for Newcastle disease virus,” said Prof Bragg.

We are also currently investigating an “unknown” virus which causes disease problems in poultry in the Western Cape,” said Prof Bragg.
 
“Although disinfection has been extensively used in the poultry industry, it has only been done at the pre-placement stage. In other words, disinfectants are used before the birds are placed into the house. Once the birds are placed, all use of disinfectants stops,” said Prof Bragg.

“Disinfection and bio security can be seen as the ‘Cinderella’ of disease control in poultry.  This is also true for human medicine. One just has to look at the high numbers of people who die from hospital-acquired infections to realise that disinfection is not a concept which is really clear in human health care,” said Prof Bragg.

Much research has been done in the control of diseases through vaccination and through the use of antibiotics. “These pillars of disease control are, however, starting to crumble and more effort is needed on disinfection and bio security,” said Prof Bragg.

Prof Bragg has been working in close co-operation with a chemical manufacturing company in Stellenbosch to develop a unique disinfectant which his highly effective yet not toxic to the birds.

As a result of this unique product, he has developed the continual disinfection program for use in poultry. In this program the disinfectant is used throughout the production cycle of the birds. It is also used to ensure that there is excellent pre-placement disinfection.

“The program is extensively used for the control of infectious diseases in the parrot-breeding industry in South Africa and the product has been registered in 15 countries around the world with registration in the USA in the final process,” said Prof Bragg.

“Although the problem of plasmid mediated resistance to disinfectants is starting to rear its ugly head, this has allowed for the opening of a new research field which my group will hopefully exploit in the near future,” he said.

 

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