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05 August 2022 | Story Leonie Bolleurs | Photo Supplied
Marike Stander
For the first time in her life, Marike Stander accompanied a group of researchers for their annual relief expedition with the SA Agulhas II from Cape Town to Marion Island, where she assisted with fieldwork and data collection. Here she is pictured at the snow-covered Karookop.


The Prince Edward Islands are the most southerly part of South Africa’s official territory and consist of Marion Island and Prince Edward Island. On Marion Island, about 270 km² in size and situated in the sub-Antarctic Indian Ocean, 1 920 km from the South African shore, activities are restricted to research and conservation management. 

This is where Marike Stander, Lecturer in the Department of Geography at the University of the Free State (UFS), was granted the opportunity to assist a research group led by Prof Werner Nel (University of Fort Hare) and Prof David Hedding (Unisa) – based on her knowledge and experience in tracer sampling. 

Back home, Stander is working to complete her doctoral research, investigating the often-overlooked major issue of soil erosion. She believes the management of soil erosion, a global issue, is key. According to her, it impacts the storage of carbon and nutrients, and therefore the production of food, but it can also act as a pollutant in water sources.

Fieldwork and data collection

She was approached by the Sub-Antarctic Landscape-Climate Interactions (SANAP-LCI) Research Group, a project funded by the South African National Antarctic Programme-NRF. One of their research objectives is to explore the viability of using geochemical tracers in the substrate on Marion Island, the focus of Stander’s doctoral research. 

With the support of the UFS Faculty of Natural and Agricultural Sciences and the Department of Geography, she was released to accompany the research group for the first time in her life on their annual relief expedition with the SA Agulhas II from Cape Town to Marion Island, where she assisted with fieldwork and data collection. During this three-week field campaign, Stander collected sediment samples for the tracer project, as well as rock and peat samples.

With the SANAP-LCI group collaborating with research labs in the United Kingdom and France, she was able to bring her expertise to the table, while at the same time learning about other geochronological techniques and field methods.  

She was also excited about the exposure to the work of a myriad of researchers in various fields from around the world. Stander says in a time when the importance of interdisciplinary and multidisciplinary work is being emphasised, it was invaluable to meet and learn from various distinguished scientists.  “It changes your perspective and allows your mind to not only think outside the box, but also to think about all the interconnected boxes and how they affect each other.”

She believes being exposed to various sampling strategies from different scientists also broaden one’s skill set and experience. “Using your capabilities and skills in a different setting builds depth to your skill set and expands your horizon.”

Volcanoes and albatrosses 

Very few people get the opportunity to visit Marion Island. Thus, just the chance to visit and experience life on the island is described by many as one of their most memorable events. Always fascinated by volcanic features, Stander was completely captivated by this relatively young volcanic island. “There are so many interesting features, such as the pahoehoe and a’a lava flows, as well as the numerous scoria cones,” describes Stander, who cannot believe that she managed to cover the vast distances in gumboots, the only footwear that are effective to cross anything – from razor-sharp rocks to deep waterlogged mires.

She was also overwhelmed by the flora and fauna on the island.  “It is so very different from what we are used to and from what I’ve experienced before.  Seeing these animals in a relatively untouched remote location really captivated me,” she says. 

“More specifically, I fell in love with the albatrosses.  These remarkable seabirds cover vast distances over the ocean looking for food. They are unfortunately threatened by the invasive mice on Marion Island.” Stander invites people to help organisations such as Mouse-Free Marion to take on the difficult task of eradicating these mice. Find them at www.mousefreemarion.org.

On a lighter note, Stander also learnt a thing or two that was totally new to her. For instance, that there are radio telescopes installed on the radio-quiet Marion Island, searching for the universe’s first stars. And that male elephant seals that drive out all other male competitors during mating season are called ‘beachmasters’. She learned that these ‘beachmaster’ bulls have a harem of female elephant seals and can weight up to three tons.


• She wishes to thank Prof Werner Nel, Prof David Hedding, and Dr Liezel Rudolph (UFS) from the SANAP-LCI project for affording her the opportunity to join the expedition. She also thanks the SANAP-NRF and the Department of Forestry, Fisheries, and the Environment for making the expedition possible. 

News Archive

Newly operational sequencing unit in genomics at UFS
2016-09-09

Description: Next Generation Sequencing  Tags: Next Generation Sequencing

Dr Martin Nyaga and his research assistant,
Tshidiso Mogotsi in the Next Generation
Sequencing Laboratory.
Photo: Charl Devenish

The Next Generation Sequencing (NGS) unit at the UFS was established as an interdisciplinary facility under the Directorate for Research Development, Faculty of Health Sciences and Faculty of Natural and Agricultural Sciences.

The aim of the NGS facility is to aid internal and external investigators undertaking studies on Deoxyribonucleic acid (DNA) sequencing, assembly and bioinformatics approaches using the more advanced Illumina MiSeq NGS platform.

The NGS unit became operational in 2016 and is managed by Dr Martin Nyaga and administered through the office of the Dean, Faculty of Health Sciences, under the leadership of Prof Gert Van Zyl. Dr Nyaga has vast experience in microbial genomics, having done his PhD in Molecular Virology.

He has worked and collaborated with globally recognised centres of excellence in Prokaryotic and Eukaryotic genomics, namely the J. Craig Venter Institute and the Laboratory of Viral Metagenomics, Rega Institute, among others.

The unit has undertaken several projects and successfully generated data on bacterial, viral and human genomes. Currently, work is ongoing on bacterial and fungal metagenomics studies through 16S rRNA sequencing.

In addition, the unit is also working on plasmid/insert sequencing and whole genome sequencing of animal and human rotaviruses. The unit has capacity to undertake other kinds of panels like the HLA, Pan-cancer and Tumor 15 sequencing, among others.

Several investigators from the UFS including but not limited to Prof Felicity Burt, Prof Wijnand Swart, Dr Frans O’Neil, Dr Trudi O'Neill, Dr Charlotte Boucher, Dr Marieka Gryzenhout and Dr Kamaldeen Baba are actively in collaboration with the NGS unit.

The unit has also invested in other specialised equipment such as the M220 Focused-ultrasonicator (Covaris), 2100 Bioanalyzer system (Agilent) and the real-time PCR cycler, the Rotor-Gene Q (Qiagen), which both the UFS and external investigators can use for their research.

Investigators working on molecular and related studies are encouraged to engage with Dr Nyaga on how they would like to approach their genomics projects at the UFS NGS unit. 

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