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02 February 2022 | Story Leonie Bolleurs | Photo Leonie Bolleurs
Chané Enslin, master’s student in the UFS Centre for Environmental Management (CEM); Stephanie Graumnitz, Institute of Hydrobiology at the Technical University Dresden (TUD); Dr Dirk Jungmann, Head of Ecotoxicology and Biomonitoring in the Institute of Hydrobiology at TUD; Sihle Mlonyeni, master’s student in the Faculty of Applied Science at the Cape Peninsula Technical University; Dr Marinda Avenant, Senior Lecturer in the CEM at the UFS; Akani Baloyi, master’s student in the UFS Disaster Management Training and Education Centre for Africa; and Sphindile Dlamini, master’s student in the Department of Zoology and Entomology on the UFS Qwaqwa Campus.


The Centre for Environmental Management (CEM) at the University of the Free State (UFS), in collaboration with Dr Dirk Jungmann from the Technical University Dresden, recently presented a virtual summer school on Blackboard, titled: Monitoring of surface water quality: General framework, tools and implementing disaster management aspects in urban areas. 

The international group of 30 persons who attended the summer school mostly comprised postgraduate students and employees from, among others, the UFS and other tertiary institutions such as the Technical University Dresden (TUD), the Cape Peninsula University of Technology (CPUT), UNISA, the University of the Western Cape, Stellenbosch University, the University of Lesotho, and the University of Zimbabwe. Members of the Council for Scientific and Industrial Research also attended the summer school.

Experts present

Dr Marinda Avenant, Senior Lecturer in the CEM, believes the summer school provides students with a wonderful opportunity to be exposed to a topic, such as aquatic biomonitoring, over and above their normal postgraduate studies. “The presenters are all experts in their field and come from a range of disciplines (from hydrology and chemistry to the social aspects of water), as well as from different countries and perspectives,” she adds. 

Some interesting topics covered during the summer school included a panel discussion on water management challenges in Southern Africa. Head of CEM, Prof Paul Oberholser, participated in this live discourse. In 2021, he won the NSTF-Water Research Commission (WRC) Award for his contribution to water resource management in SA over the past five years.

Also contributing a perspective on surface water quality was affiliated professor in CEM, Prof Anthony Turton, who delivered the keynote address on Managing surface water quality as an element of disaster management in urban areas.

Dr Alice Ncube from the UFS Disaster Management Training and Education Centre (DiMTEC) presented on women and disasters (including a case study on a stokvel in Botshabelo), and Dr Inga Jacobs-Mata from the International Water Management Institute (IWMI) provided a social perspective on the water resources sector. 

Students excel 

Five master’s students representing the UFS, the Technical University Dresden (TUD), as well as the Cape Peninsula University of Technology (CPUT), assisted with the organisation of the summer school. The Volkswagen Foundation in Germany, which funded a first summer school in 2019, provided funding that was used to appoint the five students.

According to Dr Avenant, they made provision for the appointment of these students in their project proposal to the Volkswagen Foundation. “The students played a key role in the planning of the virtual summer school; they specially came up with ideas to make the virtual sessions more interesting,” she says.

Among others, they managed the technical aspects of the sessions, introduced the speakers, arranged social activities for the virtual platform, and they produced podcasts. The podcasts of the speakers were distributed to the participants over the extent of two months, in order to learn more about the presenters. 

“We were really impressed with the work of the students, who are all from the natural sciences,” says Dr Avenant.

News Archive

Mathematical methods used to detect and classify breast cancer masses
2016-08-10

Description: Breast lesions Tags: Breast lesions

Examples of Acho’s breast mass
segmentation identification

Breast cancer is the leading cause of female mortality in developing countries. According to the World Health Organization (WHO), the low survival rates in developing countries are mainly due to the lack of early detection and adequate diagnosis programs.

Seeing the picture more clearly

Susan Acho from the University of the Free State’s Department of Medical Physics, breast cancer research focuses on using mathematical methods to delineate and classify breast masses. Advancements in medical research have led to remarkable progress in breast cancer detection, however, according to Acho, the methods of diagnosis currently available commercially, lack a detailed finesse in accurately identifying the boundaries of breast mass lesions.

Inspiration drawn from pioneer

Drawing inspiration from the Mammography Computer Aided Diagnosis Development and Implementation (CAADI) project, which was the brainchild Prof William Rae, Head of the department of Medical Physics, Acho’s MMedSc thesis titled ‘Segmentation and Quantitative Characterisation of Breast Masses Imaged using Digital Mammography’ investigates classical segmentation algorithms, texture features and classification of breast masses in mammography. It is a rare research topic in South Africa.

 Characterisation of breast masses, involves delineating and analysing the breast mass region on a mammogram in order to determine its shape, margin and texture composition. Computer-aided diagnosis (CAD) program detects the outline of the mass lesion, and uses this information together with its texture features to determine the clinical traits of the mass. CAD programs mark suspicious areas for second look or areas on a mammogram that the radiologist might have overlooked. It can act as an independent double reader of a mammogram in institutions where there is a shortage of trained mammogram readers. 

Light at the end of the tunnel

Breast cancer is one of the most common malignancies among females in South Africa. “The challenge is being able to apply these mathematical methods in the medical field to help find solutions to specific medical problems, and that’s what I hope my research will do,” she says.

By using mathematics, physics and digital imaging to understand breast masses on mammograms, her research bridges the gap between these fields to provide algorithms which are applicable in medical image interpretation.

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