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10 November 2023 | Story Ouma Ngoepe | Photo SUPPLIED
Liezl Geldenhuys (ZZ2), Mellisa Pringle (Lasec), Ouma Ngoepe (CMBG), Prof Maryna de Wit (SFSD), Dr Mariana Erasmus (CMBG), Bernadine Taljaard (ZZ2), Khezwo Nematshema (SFSD), Shahiëda Cloete (SFSD), Jan Andries Viktor (SFSD), Vuyelwa Nkoi (SFSD).
Liezl Geldenhuys (ZZ2), Mellisa Pringle (Lasec), Ouma Ngoepe (CMBG), Prof Maryna de Wit (SFSD), Dr Mariana Erasmus (CMBG), Bernadine Taljaard (ZZ2), Khezwo Nematshema (SFSD), Shahiëda Cloete (SFSD), Jan Andries Viktor (SFSD), Vuyelwa Nkoi (SFSD).

The Centre for Mineral Biogeochemistry (CMBG) at the University of the Free State (UFS) was part of another successful Tritech National Science and Technology Fair 2023 – an exciting STEM (Science, Technology, Engineering, and Mathematics) research competition.

The UFS has partnered with Tritech and other sponsors since 2021 to bridge the gap between high school and tertiary education. Tritech, which started in 2008 and is open to all Grade 7-12 learners, aims to equip them for tertiary education by introducing them to scientific research and incorporating modern technology in research. This is an annual competition that starts at the regional level and goes all the way to the national level, with the national competition held at the Merensky High School, in Tzaneen, Limpopo from 20-21 October 2023.

Schools from across the country take part in the fair, but learners compete in groups rather than schools. 

Every year the Tritech Nationals are divided into four main activities over the weekend: 
  1. On the Friday afternoon the learners present their STEM projects in which they have identified a problem in a community, do research to find a solution, do experiments to test if the solution will solve the problem, then test the solution in the community, and lastly, present their findings to a group of judges and learners in similar fields. Fields include Life Sciences, Engineering and Design, Maths, Science and Technology, Environmental and Social Sciences, Health Sciences and Agricultural Sciences.
  2. Friday evening is usually a fun activity for the learners.
  3. On Saturday morning the learners are exposed to work-related activities that give them insight into professions they could pursue in the science field. This activity is sponsored and presented by the UFS. 
  4. The last activity of the weekend is the prize-giving on Saturday afternoon where the learners get rewarded for the quality of their projects and honour, celebrate, and encourage excellence. 

“Every year the CMBG includes different departments from the UFS in alignment with the theme for the event, to ignite a lasting passion for innovation toward promising careers in the STEM fields. In 2022 the theme for Tritech was “Crime Scene Investigators” and the CMBG team created a very realistic crime scene and laboratory setup to teach the learners about Forensic Science. The learners scored our CSI activity as the best for the weekend and we knew that for the 2023 Nationals, we had our work cut out to do even better,” says Dr Erasmus. 

Learning about food health and safety

This year, Prof Maryna de Wit and her students from the Department of Sustainable Food Systems and Development (SFSD) joined the CMBG team, to introduce learners to food health and safety, food preservation, food systems and development, as well as sensory analyses. 

Island, shipwrecks, and wilderness survival

Dr Mariana Erasmus, Deputy Director of the Centre for Mineral Biogeochemistry (CMBG), spearheads the Tritech team from the UFS. CMBG, as part of its community outreach programme, is not only a sponsor of the event but is also the organiser of the main activity together with another UFS department. 

Dr Erasmus says the theme for Tritech 2023 was “Survival MasterChef”, where for the two activity events, the Tritech learners were “stranded” on an island. This exercise was a great way to promote leadership qualities, encourage creativity and confidence, promote teamwork and active communication, and increase critical thinking in learners, while they got to know more about food health and safety practices.

“It was all island, shipwrecks, and wilderness survival at this year’s event where learners had to survive after being ‘stranded’ on an island. To escape, the learners had to build a boat and while they waited to be rescued, they needed to adapt to island life to survive by preparing healthy meals, as well as preparing meals and drinks to treat dehydration and scurvy,” says Dr Erasmus. 

“During the prize-giving, some of the learners received shadowing opportunities at the UFS and other sponsors to advance their education. Bronze, silver, and gold medals, together with participation certificates, were awarded to other deserving learners.” 

News Archive

Newly operational sequencing unit in genomics at UFS
2016-09-09

Description: Next Generation Sequencing  Tags: Next Generation Sequencing

Dr Martin Nyaga and his research assistant,
Tshidiso Mogotsi in the Next Generation
Sequencing Laboratory.
Photo: Charl Devenish

The Next Generation Sequencing (NGS) unit at the UFS was established as an interdisciplinary facility under the Directorate for Research Development, Faculty of Health Sciences and Faculty of Natural and Agricultural Sciences.

The aim of the NGS facility is to aid internal and external investigators undertaking studies on Deoxyribonucleic acid (DNA) sequencing, assembly and bioinformatics approaches using the more advanced Illumina MiSeq NGS platform.

The NGS unit became operational in 2016 and is managed by Dr Martin Nyaga and administered through the office of the Dean, Faculty of Health Sciences, under the leadership of Prof Gert Van Zyl. Dr Nyaga has vast experience in microbial genomics, having done his PhD in Molecular Virology.

He has worked and collaborated with globally recognised centres of excellence in Prokaryotic and Eukaryotic genomics, namely the J. Craig Venter Institute and the Laboratory of Viral Metagenomics, Rega Institute, among others.

The unit has undertaken several projects and successfully generated data on bacterial, viral and human genomes. Currently, work is ongoing on bacterial and fungal metagenomics studies through 16S rRNA sequencing.

In addition, the unit is also working on plasmid/insert sequencing and whole genome sequencing of animal and human rotaviruses. The unit has capacity to undertake other kinds of panels like the HLA, Pan-cancer and Tumor 15 sequencing, among others.

Several investigators from the UFS including but not limited to Prof Felicity Burt, Prof Wijnand Swart, Dr Frans O’Neil, Dr Trudi O'Neill, Dr Charlotte Boucher, Dr Marieka Gryzenhout and Dr Kamaldeen Baba are actively in collaboration with the NGS unit.

The unit has also invested in other specialised equipment such as the M220 Focused-ultrasonicator (Covaris), 2100 Bioanalyzer system (Agilent) and the real-time PCR cycler, the Rotor-Gene Q (Qiagen), which both the UFS and external investigators can use for their research.

Investigators working on molecular and related studies are encouraged to engage with Dr Nyaga on how they would like to approach their genomics projects at the UFS NGS unit. 

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