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27 June 2025 | Story University of the Free State | Photo Supplied
Ecological Engineering
Dr Jacques Maritz, Albert van Eck, and Dr Nola Redelinghuys are among the University of the Free State researchers driving an interdisciplinary project that combines social insight, high-performance computing, and ecological engineering to support South Africa’s just energy transition.

The University of the Free State (UFS) is taking bold steps to address the complexities of South Africa’s energy transition by combining expertise across disciplines, innovative technologies such as high-performance computing (HPC), and active student involvement. This forward-thinking approach is positioning the UFS at the forefront of solving real-world challenges linked to renewable energy adoption and social dynamics, while equipping students with future-ready skills.

 

Interdisciplinary solutions for a just energy transition

“Current grand challenges – the pressing societal and scientific problems shaping research at the UFS and globally – require students and researchers to include computational approaches such as modelling, simulations, and large-scale data analysis,” says Dr Jacques Maritz, Head of the Unit for Engineering Sciences at the UFS.

“One such example is in merging social dynamics with energy paradigms – two seemingly different worlds, yet connected via scientific elegance,” says Dr Maritz. Energy decisions, such as shifting to renewables, are shaped by the behaviour of communities, governments, and industries. As a recent response to these challenges, ecological and nature-based engineering sciences at the UFS aim to integrate human activity into nature, while benefiting both via the merging of computation, ecological engineering sciences, nature-based solutions, and data-driven complexity science. 

The UFS’ pioneering project models these complex social-energy relationships to better understand how South Africa can sustainably and justly transition from fossil fuels to renewable energy. This interdisciplinary effort involves researchers and students from physics, sociology, engineering, data science, and mathematical modelling working together to map these interdependencies shaped by economic, political, cultural, and community forces.

For students such as Lurgasho Minnie, a final-year MSc Astrophysics student, this interdisciplinary exposure is transformative. “It has given me a new lens or perspective on approaching and solving problems in my field of research. By approaching challenges from an interdisciplinary point of view, new methods and techniques can be applied to solve challenging problems,” he says.

A crucial part of this research involves modelling dynamic social-energy networks using systems thinking, network analysis, and scenario planning. These tools help simulate interactions between government policies, community behaviour, environmental impacts, and technological innovations, allowing researchers to predict and plan for different future scenarios.

Students are actively shaping this work. The first set of social data was collected by UFS students on the Qwaqwa Campus, with training and support from the Centre for Global Change and Student Affairs. These data-gathering efforts are not only enriching the research but also building students' skills in real-world data collection and analysis.

“One of the study objectives is to inform the development of an awareness campaign about the complexities inherent in transitioning from a predominantly non-renewable to a renewable energy system, firstly aimed at UFS students but ultimately at the broader community,” explains Dr Nola Redelinghuys, Senior Lecturer in Sociology at the UFS.

The research team also hopes to help shape sustainable energy solutions for the university itself, with plans to create a renewable energy supply network that balances energy demand and renewable supply across the UFS campuses.

 

High-performance computing powering new insights 

At the heart of this initiative is the UFS High-Performance Computing (HPC) Unit, which enables researchers to run complex simulations and process vast data sets. The HPC is essential for solving problems that require immense computing power and data storage, and the UFS is making these resources accessible to a growing number of students – even those from non-computational disciplines.

“The eResearch and HPC team promotes the development of new skills and knowledge to harness the power of HPC and expand one’s technological abilities to solve problems. The HPC staff must first train a student or researcher to use the system effectively before using their toolsets. Thereafter, students can streamline or even automate specific processes by using a collection of more generic toolsets. Even if not using an HPC daily (or after entering the workforce), the HPC methodologies and toolsets they are exposed to often change how a person approaches future problem sets. Students using the HPC are more likely to share their experiences and are encouraged to assist other students in their department to lessen the burden of entry for newcomers. This broadens the collective knowledge within a department on their toolsets and how to use them effectively,” says Albert van Eck, Director of the UFS HPC.

Students can also learn how to build and configure basic HPC clusters through freely available training materials, opening doors to careers in private cloud hosting, data science, genomics, and other tech industries. By focusing on open-source tools, the UFS ensures that students acquire industry-relevant skills without being locked into specific software vendors.

The project is also laying the groundwork for partnerships with renewable energy companies, technology firms, NGOs, and development agencies. These collaborations will strengthen the UFS’ industry ties and create more work-integrated learning (WIL) opportunities for students.

As part of UFS Vision 130, this project advances academic excellence, societal impact, and inclusivity. By involving diverse staff and students from both the Bloemfontein and Qwaqwa Campuses, it demonstrates the university’s commitment to building a future-ready, skilled, and socially conscious graduate community prepared to tackle South Africa’s energy challenges.

In a country grappling with energy security and the need for a just transition, the UFS’ approach – blending social insight, cutting-edge technology, and student empowerment – offers a valuable model for addressing one of the nation’s most pressing development priorities.

News Archive

UFS study on cell development in top international science journal
2008-09-16

A study from the University of the Free State (UFS) on how the change in the packaging of DNA with cell development influenced the expression of genes, will be published in this week’s early edition of the prestigious international, peer-reviewed science journal, the Proceeding of the National Academy of Sciences of the USA (PNAS).

The PNAS journal has an impact factor of 10, which means that studies published in the journal are, on average, referred to by ten other scientific studies in a two year period. The South African Journal of Science, by comparison, has an impact factor of 0.7.

The UFS study, funded by the Wellcome Trust and the National Research Foundation (NRF), looked at how the change in the packaging of DNA with cell development influenced the expression of genes. It is very relevant to research on stem cells, an area of medicine that studies the possible use of undifferentiated cells to replace damaged tissue.

Prof. Hugh Patterton, of the Department of Microbial, Biochemical and Food Biotechnology at the UFS, who led the study, said: "We are extremely proud of this study. It was conceived in South Africa, it was performed in South Africa, the data were analysed in South Africa, and it was published from South Africa."

When a gene is expressed, the information encoded in the gene is used to manufacture a specific protein. In eukaryotes, which include humans, there is approximately 1m of DNA, containing the genes, in every cell. This length of DNA has to fit into a cell nucleus with a diameter of only about 10 micrometer. In order to fit the DNA into such a small volume, eukaryotic cells wrap their DNA onto successive protein balls, termed nucleosomes. Strings of nucleosomes, resembling a bead of pearls, is folded into a helix to form a chromatin fiber. The study from the UFS investigated how the binding of a specific protein, termed a linker histone, that binds to the length of DNA between nucleosomes, influenced the formation of the chromatin fiber and also the activity of genes.

"We found that the linker histone bound to chromatin in yeast, which we use as a model eukaryote, under conditions where virtually all the genes in the organism were inactive. It was widely believed that the binding of the linker histone caused the inactivation of genes. We studied the relationship between the amount of linker histone bound in the vicinity of each gene and the expression of that gene for all the genes in yeast, using genomic techniques. We made the surprising discovery that even through the linker histone preferentially bound to genes under conditions where the genes were shut off, this inactivation of genes was not caused by the binding of the linker histone and folding of the chromatin,” said Prof. Patterton.

He said: “Instead our data strongly suggested that the observed anti-correlation was due to the movement of enzymes along the DNA molecule, involved in processing the information in genes for the eventual manufacture of proteins. This movement of enzymes displaced the linker histones from the DNA. This finding now requires a rethink on aspects of how packaging of DNA influences gene activity."

Prof. Patterton said that his research group, using the Facility for Genomics and Proteomics as well as the Bioinformatics Node at the UFS, was currently busy with follow-up studies to understand how other proteins in nucleosomes affected the activities of genes, as well as with projects to understand how chemicals found in red wine and in green tea extended lifespan. "We are certainly having a marvelous time trying to understand the fundamental mechanisms of life, and the UFS is an exciting place to be if one was interested in studying life at the level of molecules," he said.


Media Release
Issued by: Lacea Loader
Assistant Director: Media Liaison
Tel: 051 401 2584
Cell: 083 645 2454
E-mail: loaderl.stg@ufs.ac.za  
18 September 2008
 

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