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UFS researchers reimagine ancient stromatolites to advance Ecological Engineering Sciences

12 June 2025 | Story University of the Free State | Photo Supplied

Dr Hossein Naghizadeh and Refilwe Lediga — Collaborative innovation in action: Researchers from the University of the Free State’s Green Concrete Lab have partnered with the University of Johannesburg to advance 3D printing technologies using sustainable concrete materials. Pictured (from left): Dr Hossein Naghizadeh, Senior Lecturer in Engineering Sciences at UFS, and Refilwe Lediga, Concrete Printing Research Expert in the Department of Civil Engineering Technology at UJ.

In an ambitious and interdisciplinary effort to address today’s Grand Challenges, researchers at the University of the Free State (UFS) are exploring how nature’s oldest life forms – stromatolites – can inspire cutting-edge innovations in industrial ecology and marine conservation. Drawing from biomimicry, 3D printing, and microbial engineering, their work showcases the convergence of ecological insight with modern technology.

“One such example is replicating the structures of stromatolites – some of the earliest evidence of life - using green cement and 3D printing, the latest technology in industrial ecology,” explains Dr Jacques Maritz, Head of the Unit of Engineering Sciences at UFS.

Ancient structures, modern science

Stromatolites are layered microbial formations created by ancient cyanobacteria and date back over 3.5 billion years. These living fossils, found in fossil records and rare modern environments like Shark Bay in Australia, grow through a combination of photosynthesis, sediment trapping, and calcium carbonate precipitation. Not only do they support biodiversity, but they also play a vital role in natural carbon sequestration.

UFS researchers are harnessing the lessons from these ancient formations to address urgent environmental challenges. In particular, Dr Yolandi Schoeman, Senior Lecturer at the Centre for Biogeochemistry, is leading efforts to cultivate hybrid stromatolites in controlled environments, using microbial consortia grown on 3D-printed scaffolds.

“At UFS, we are reimagining stromatolite formation through both artificial structural replication and biological cultivation, bridging industrial ecology and microbial engineering to address modern environmental challenges,” says Dr Schoeman.

Ecological engineering for reef restoration

The rapid decline of marine biodiversity and the degradation of natural reef ecosystems have prompted ecological engineers to develop innovative solutions. At the UFS Green Concrete Lab, researchers are pioneering the design of artificial reefs using 3D-printed, low-carbon geopolymer concrete – a material formulated from industrial by-products such as fly ash and slag.

Artificial reefs mimic natural reef complexity and serve as critical habitats for marine life, from fish and crustaceans to coral polyps and algae. Algae, in particular, are key to marine ecosystems due to their roles in nutrient cycling, oxygen production, and carbon capture.

“Green concrete refers to concrete that utilises alternative binders and industrial by-products, significantly reducing the environmental footprint. At UFS, we are focusing on geopolymer concrete, which eliminates the high-energy processes associated with Portland cement, while offering greater chemical resistance - ideal for marine applications,” explains Dr Abdolhossein Naghizadeh from the Unit of Engineering Sciences.

3D printing nature’s complexity

One of the challenges in artificial reef development is replicating biologically inspired geometries that support diverse marine ecosystems. Traditional construction methods often fail in this regard, but additive manufacturing, or 3D concrete printing, is providing a solution.

The UFS Green Concrete Lab, in collaboration with the University of Johannesburg, is developing reef modules with intricate geometries and natural surface textures. These features support coral and algae attachment, accelerate ecological colonisation, and enhance habitat functionality. Biochar-based compost filters are also being integrated to aid algae-driven wastewater treatment.

A particularly novel avenue of research involves using 3D printing to recreate stromatolite structures. These serve as ancient blueprints for modern reef design, merging deep-time ecological understanding with advanced material science.

Biologically engineered hybrid stromatolites

In parallel to structural efforts, UFS is advancing biological approaches to stromatolite cultivation. From July 2025, researchers in the Unit of Engineering Sciences will initiate a large-scale experiment using microbial consortia in 60-litre tanks, scaling up to 1 m² hypersaline ponds. 3D-printed conical scaffolds, coated with materials such as PP-CaCO₃, hydroxyapatite, and silica gel, will accelerate microbial colonisation and lamination.

The goal: to achieve stromatolite growth of 14-16 mm in just 28 days - over 150 times faster than in nature. These hybrid systems are expected to produce 7-8 mg/L/day of oxygen, sequester carbon at 3.2 g/m²/day, and remove up to 90% of nitrates and phosphates from water. The potential applications extend from terrestrial ecosystem restoration to extraterrestrial life-support systems.

A multidisciplinary vision for sustainability

This work exemplifies the strength of interdisciplinary research at UFS, combining civil engineering, mechatronics, marine ecology, chemistry, microbiology, and digital fabrication. The Ecological Engineering Sciences stream fosters a vibrant environment for postgraduate students to develop practical, impactful solutions.

The Green Concrete Lab is central to these efforts, offering students and researchers access to advanced technologies and collaborative networks. Through their innovative work in 3D-printed green concrete and microbial systems, UFS researchers are addressing biodiversity loss, advancing sustainable construction, and contributing to the global climate agenda.

“Whether it's rethinking materials, restoring ecosystems, or redefining what concrete can be, our research is laying the foundation for a better, more sustainable world beneath the waves,” concludes Dr Maritz.

News Archive

Researchers international leaders in satellite tracking in the wildlife environment

2015-05-29

Ground-breaking research has attracted international media attention to Francois Deacon, lecturer and researcher in the Department Animal, Wildlife and Grassland Sciences at the UFS, and Prof Nico Smit, from the same department. They are the first researchers in the world to equip giraffes with GPS collars, and to conduct research on this initiative. Recently, they have been joined by Hennie Butler from the Department of Zoology as well as Free State Nature Conservation to further this research.

“Satellite tracking is proving to be extremely valuable in the wildlife environment. The unit is based on a mobile global two-way communication platform, utilising two-way data satellite communication, complete with GPS systems.

“It allows us to track animals day and night, while we monitor their movements remotely from the computer. These systems make possible the efficient control and monitoring of wildlife in all weather conditions and in near-to-real time. We can even communicate with the animals, calling up their positions or changing the tracking schedules.

“The satellite collar allows us to use the extremely accurate data to conduct research with the best technology available. The volume of data received allows us to publish the data in scientific journals and research-related articles.

“Scientific institutions and the public sector have both shown great interest in satellite tracking, which opens up new ground for scientific research for this university. Data management can be done, using Africa Wildlife Tracking (AWT) equipment where we can access our data personally, store it, and make visual presentations. The AWT system and software architecture provide the researcher with asset tracking, GPS location reports, geo-fencing, highly-detailed custom mapping, history reports and playback, polling on demand, history plotting on maps, and a range of reporting types and functions,” Francois said.

Data can be analysed to determine home range, dispersal, or habitat preference for any specific species.

Francois has been involved in multiple research projects over the last 12 years on wildlife species and domesticated animals, including the collaring of species such as Black-backed Jackal, Caracal, African Wild Dog, Hyena, Lion, Cheetah, Cattle, Kudu, Giraffe, and Black Rhino: “Giraffe definitely being the most challenging of all,” he said.

In 2010, he started working on his PhD, entitled The spatial ecology, habitat preferences and diet selection of giraffe (Giraffa camelopardalis giraffa) in the Kalahari region of South Africa.

Since then, his work has resulted not only in more research work (supervising four Masters students) but also in a number of national and international projects. These include work in the:

Kalahari region (e.g. Khamab Nature Reserve and Kgalagadi Transfrontier Park)
Kuruman region (Collared 18 cattle to identify spatial patterns in relation to the qualities of vegetation and soil-types available. This project took place in collaboration with Born University in Germany)
Woodland Hills Wildlife Estate and Kolomella Iron Ore – ecological monitoring
A number of Free State nature reserves (e.g. Distribution of herbivores (kudu and giraffe) and predators (camera traps)

Francois is also involved with species breeding programmes and management (giraffe, buffalo, sable, roan, and rhino) in Korrannaberg, Rustenburg, Hertzogville, Douglas, and Bethlehem as well as animal and ecological monitoring in Kolomella and Beesthoek iron ore.

Besides the collaring of giraffes, Francois and his colleagues are involved in national projects, where they collect milk from lactating giraffes and DNA material, blood samples, and ecto/endo parasites from giraffes in Southern Africa.

With international projects, Francois is working to collect DNA material for the classification of the nine sub-species of giraffe in Africa. He is also involved in projects focusing on the spatial ecology and adaptation of giraffe in Uganda (Murchison Falls), and to save the last 30 giraffe in the DRC- Garamba National Park.

This project has attracted a good deal of international interest. In June 2014, a US film crew (freelancing for Discovery Channel) filmed a documentary on Francois’ research (trailer of documentary). Early in 2015, a second crew, filming for National Geographic, also visited Francois to document his work.

More information about Francois’ work is available at the GCF website.

Read Francois Deacon's PhD abstract

Direct enquiries to news@ufs.ac.za.

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