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ARU extends mountain research across Africa

20 May 2021 | Story Leonie Bolleurs | Photo Leonie Bolleurs

Aru read more — The Maloti-Drakensberg is known as the ’water tower of Southern Africa’, as it is the largest provider of fresh water in the region. If the alpine system collapses, the water production will be detrimentally impacted.

The Afromontane Research Unit (ARU) of the University of the Free State, based in Phuthaditjhaba South Africa, is partnering with several institutions of higher learning, relevant forums, foundations, and policy makers in Africa in an attempt to expand its alpine research.

The research unit is joining forces with the University of Helsinki (Finland) and the National University of Lesotho (NUL) for a National Research Foundation (NRF) award to the University of Pretoria on using fine-scale functional and compositional variation in alpine plants to predict the impact of climate change. According to Dr Ralph Clark, Director of the ARU, this project will expand understanding of the ecology of the alpine zone in the Maloti-Drakensberg, and its similarity (or dissimilarity) with other alpine and tundra environments.

First step towards sustainability and restoration

A complimentary visit by Alex Hickman, Chair of the African Mountain Research Foundation (AMRF), to the Bvumba Mountains in Zimbabwe, the ARU, and Afriski, laid the psychological foundations for the first two AMRF mountain observatories, as well as gaining support from Afriski as a focus area for alpine studies in the Maloti-Drakensberg.

Dr Clark explains that the Maloti-Drakensberg is known as the ’water tower of Southern Africa’, as it is the largest provider of fresh water in the region. “The alpine system is critical to this water provisioning function but is under tremendous pressure from intense communal rangeland degradation. If the alpine system collapses, the water production will be detrimentally impacted,” he says.

“Understanding this alpine system holistically is the first step to sustainability and restoration in a social-ecological paradigm,” he adds.

Building capacity for mountain research

The ARU is leading two University Staff Doctorate Programmes (USDPs), both in partnership with the University of Venda, which supports 20 young academics to achieve their doctorates. Dr Clark says while doctoral topics are diverse, they are both focused on building capacity for mountain research in Southern Africa – including the mountain cities of Phuthaditjhaba and Thohoyandou.

According to him, there are three partners from the United States of America (Appalachian and Colorado State Universities, and the University of Montana) and one partner from the United Kingdom (University of the Highlands and Islands) in the USDPs. Prof Geofrey Mukwada from the Department of Geography and Dr Grey Magaiza from the Department of Sociology are co-ordinating the USDPs.

The ARU has also attracted one of Southern Africa’s top biodiversity scientists, Prof Peter Taylor, who started at the ARU Department of Zoology and Entomology in January 2021. Dr Clark believes that Prof Taylor – an NRF B3-rated researcher with an H-index of 34 who handed over his SARChI Research Chair to join the ARU – will catapult the ARU to a higher level of regional connectivity (notably with Angola), research outputs, and internal mentoring capacity. Prof Taylor, described as a mammologist and evolutionary biologist, specialises in the systematics, ecology, conservation, and ecosystem services and disservices of small mammals, in particular rodents, bats, and shrews.

Collaboration with two SARChI chairs

The ARU also collaborates with two Department of Science and Innovation NRF centres of excellence (Centre for Biological Control at Rhodes University, and the Centre for Invasion Biology at Stellenbosch University) and one SARChI Chair (Ecosystem Health and Biodiversity in KwaZulu-Natal and the Eastern Cape) on various non-native species in Southern African mountains.

“The rose (Rosaceae) and grass (Poaceae) plant families are particular problem groups in our mountains. For example, firethorns (Pyracantha species) invade native grassland, taking over valuable grazing land and displacing indigenous species. Nassella grasses similarly displace natural rangeland and render farms unusable – if unchecked, the cost of controlling the nassella can exceed the value of the property. Our research seeks to understand the reproductive ecology of these species better, as well as best practice management,” explains Dr Clark.

In addition, the ARU has an ongoing collaboration on montane pollination systems with the SARChI Chair in Evolutionary Biology at the University of KwaZulu-Natal and the University of Cape Town. Dr Sandy-Lynn Steenhuisen in the Department of Plant Sciences is the ARU champion for both programmes.

Connecting with policy makers in Lesotho

As of the first quarter in 2020, the ARU was invited to sit on the Maloti-Drakensberg Transfrontier Programme (MDTP): Biodiversity Sub-Committee. This opportunity enables the ARU to connect directly with high-level policy makers in Lesotho and South Africa, and to increase its reach for science-policy connections across the Maloti-Drakensberg region.

Dr Clark states that partnerships under the MDTP can assist in achieving the ARU’s research goal of ‘the sustainable development of the Maloti-Drakensberg’. According to him, the ARU has proposed a focus in the MDTP on the degradation of the Mont-aux-Sources area. A qualitative site assessment by Dr Clark has, among others, also led to a book chapter being submitted in 2021.

The ARU is also extending its reach to include research on montane wetlands. Together with BirdLife South Africa, they have finalised a memorandum of understanding around montane wetland research, offering the potential for partnering to survey poorly studied montane wetlands for rare biodiversity, notably key endangered bird species.

Dr Clark says the montane wetland bio-acoustic network has been strengthened through Dr Peter Chatanga (NUL) landing a British Ecological Society grant for bio-acoustic work in Bokong Nature Reserve in Lesotho, in collaboration with Prof Aliza le Roux from the Department of Zoology and Entomology and the Okinawa Institute of Science and Technology in Japan, as well as linking to BirdLife’s programme.

Global Mountain Safeguard Research in Southern Africa

Southern African links grew well in 2020 due to new mountain-focused contacts in Madagascar, Zambia, Malawi, and Réunion through the Global Mountain Safeguard Research (GLOMOS)-led Safeguarding Mountains book project, with Dr Clark being the editor of the African contribution.

The ARU submitted several research proposals with members of the GLOMOS team, including on water security and civic society in Maloti-a-Phofung Local Municipality; climate change and water provisioning in the Maloti-Drakensberg; and a book (in process) on Phuthaditjhaba as an African mountain city.

The ARU is also planning the first Southern African Mountain Conference (SAMC2022) in partnership with the AMRF and GLOMOS, which will take place from 14 to 17 March 2022. According to Dr Clark, they seek to draw a strong regional contribution for a better understanding of Southern African mountains as social-ecological systems. “We also aim to form a stronger science-policy-practitioner interface and community of practice for Southern African mountains,” he says.

News Archive

Inaugural lecture: Prof Robert Bragg, Dept. of Microbial, Biochemical and Food Biotechnology

2006-05-17

Attending the inaugural lecture were in front from the left Prof Robert Bragg (lecturer at the Department of Microbial, Biochemical and Food Biotechnology) and Frederick Fourie (Rector and Vice-Chancellor). At the back from the left were Prof James du Preez (Departmental Chairperson: Department of Microbial, Biochemical and Food Biotechnology) and Prof Herman van Schalkwyk (Dean: Faculty of Natural and Agricultural Sciences). Photo: Stephen Collett

A summary of an inaugural lecture delivered by Prof Robert Bragg at the University of the Free State:

CONTROL OF INFECTIOUS AVIAN DISEASES – LESSONS FOR MAN?

Prof Robert R Bragg
Department of Microbial, Biochemical and Food Biotechnology
University of the Free State

“Many of the lessons learnt in disease control in poultry will have application on human medicine,” said Prof Robert Bragg, lecturer at the University of the Free State’s (UFS) Department of Microbial, Biochemical and Food Biotechnology during his inaugural lecture.

Prof Bragg said the development of vaccines remains the main stay of disease control in humans as well as in avian species. Disease control can not rely on vaccination alone and other disease-control options must be examined.

“With the increasing problems of antibiotic resistance, the use of disinfection and bio security are becoming more important,” he said.

“Avian influenza (AI) is an example of a disease which can spread from birds to humans. Hopefully this virus will not develop human to human transmission,” said Prof Bragg.

According to Prof Bragg, South Africa is not on the migration route of water birds, which are the main transmitters of AI. “This makes South Africa one of the countries less likely to get the disease,” he said.

If the AI virus does develop human to human transmission, it could make the 1918 flu pandemic pale into insignificance. During the 1918 flu pandemic, the virus had a mortality rate of only 3%, yet more than 50 million people died.

Although the AI virus has not developed human-to-human transmission, all human cases have been related to direct contact with infected birds. The mortality rate in humans who have contracted this virus is 67%.

“Apart from the obvious fears for the human population, this virus is a very serious poultry pathogen and can cause 100% mortality in poultry populations. Poultry meat and egg production is the staple protein source in most countries around the world. The virus is currently devastating the poultry industry world-wide,” said Prof Bragg.

Prof Bragg’s research activities on avian diseases started off with the investigation of diseases in poultry. “The average life cycle of a broiler chicken is 42 days. After this short time, they are slaughtered. As a result of the short generation time in poultry, one can observe changes in microbial populations as a result of the use of vaccines, antibiotics and disinfectants,” said Prof Bragg.

“Much of my research effort has been directed towards the control of infectious coryza in layers, which is caused by the bacterium Avibacterium paragallinarum. This disease is a type of sinusitis in the layer chickens and can cause a drop in egg product of up to 40%,” said Prof Bragg.

The vaccines used around the world in an attempt to control this disease are all inactivated vaccines. One of the most important points is the selection of the correct strains of the bacterium to use in the vaccine.

Prof Bragg established that in South Africa, there are four different serovars of the bacterium and one of these, the serovar C-3 strain, was believed to be unique to Southern Africa. He also recently discovered this serovar for the first time in Israel, thus indicating that this serovar might have a wider distribution than originally believed.

Vaccines used in this country did not contain this serovar. Prof Bragg established that the long term use of vaccines not containing the local South African strain resulted in a shift in the population distribution of the pathogen.

Prof Bragg’s research activities also include disease control in parrots and pigeons. “One of the main research projects in my group is on the disease in parrots caused by the circovirus Beak and Feather Disease virus. This virus causes serious problems in the parrot breeding industry in this country. This virus is also threatening the highly endangered and endemic Cape Parrot,” said Prof Bragg.

Prof Bragg’s research group is currently working on the development of a DNA vaccine which will assist in the control of the disease, not only in the parrot breeding industry, but also to help the highly endangered Cape Parrot in its battle for survival.

“Not all of our research efforts are directed towards infectious coryza or the Beak and Feather Disease virus. One of my Masters students is currently investigating the cell receptors involved in the binding of Newcastle Disease virus to cancerous cells and normal cells of humans. This work will also eventually lead to a possible treatment of cancer in humans and will assist with the development of a recombinant vaccine for Newcastle disease virus,” said Prof Bragg.

We are also currently investigating an “unknown” virus which causes disease problems in poultry in the Western Cape,” said Prof Bragg.

“Although disinfection has been extensively used in the poultry industry, it has only been done at the pre-placement stage. In other words, disinfectants are used before the birds are placed into the house. Once the birds are placed, all use of disinfectants stops,” said Prof Bragg.

“Disinfection and bio security can be seen as the ‘Cinderella’ of disease control in poultry. This is also true for human medicine. One just has to look at the high numbers of people who die from hospital-acquired infections to realise that disinfection is not a concept which is really clear in human health care,” said Prof Bragg.

Much research has been done in the control of diseases through vaccination and through the use of antibiotics. “These pillars of disease control are, however, starting to crumble and more effort is needed on disinfection and bio security,” said Prof Bragg.

Prof Bragg has been working in close co-operation with a chemical manufacturing company in Stellenbosch to develop a unique disinfectant which his highly effective yet not toxic to the birds.

As a result of this unique product, he has developed the continual disinfection program for use in poultry. In this program the disinfectant is used throughout the production cycle of the birds. It is also used to ensure that there is excellent pre-placement disinfection.

“The program is extensively used for the control of infectious diseases in the parrot-breeding industry in South Africa and the product has been registered in 15 countries around the world with registration in the USA in the final process,” said Prof Bragg.

“Although the problem of plasmid mediated resistance to disinfectants is starting to rear its ugly head, this has allowed for the opening of a new research field which my group will hopefully exploit in the near future,” he said.

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